Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1774 atggtgGGCTCAGGAACAACAACAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCACGAGGCCCTCAGAAGTGTGTGCCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCAAGAGTGAGAGGTGGCAATGGGTGCAAAGTTGGAGATGACAACGGTAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGTGGAAGAGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGAAAATCTTTTAGCAAAATGTCCATTCAGTTATATAATTACGGAGAAGGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCCACGGAATGTGAACCTAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTCTTCCACCTGAATGGATAGATCAGTTTGAGTCAGGCATTCAGACCATCGCTGTAATTCAAGCTGGGCATGGCCTTCTGCAACTTGGTTCGTGCAAGATTGTGAGTAAAtttgtgtatataatttttttttctttattttatactatttttagattgtttatgcataatttaaaatttactgtTACTACTTTTACAGCATTCATATTTGTGTGCCTATTTATTGGGTGTGAAATGTTACCAACAACTCTAgttaatgagaaattattacatggtttGGGACCACCACATGTCTATGGTTATCTGACCAATCTTCATGTGATACGTAACCtagttattaactttttttcttaa 771 0.3722 MVGSGTTTDRSKEAVGMMALHEALRSVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGLMGKVTSDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWIDQFESGIQTIAVIQAGHGLLQLGSCKIVSKFVYIIFFSLFYTIFRLFMHNLKFTVTTFTAFIFVCLFIGCEMLPTTLVNEKLLHGLGPPHVYGYLTNLHVIRNLVINFFS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1774 256 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 74 IPR025610 -
Ssu3g1774 256 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 89 176 IPR025610 -
Ssu3g1774 256 PANTHER GB|AAF34833.1 1 179 IPR044170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1774 Ssu-Chr3 54909606 54911628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1774 21 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 30.460 8.27e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1774 - - gmx:100789006 366.696