Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1771 ATGGCGGGCAGAGAAATTTTACATAAGATGAAGGAAAAAGTTTTGGGTTCATCTGATCCTGATTCAGGTAAAGGAAAGAGCAAGATGAAGAAGCACATAACTCATGGCTTTCATTTGGTAAAGGGAAAATCAGGTCATGCCATGGAAGACTTTGTTGTTGCTCAATTTAAGCAAGTTGATAGCAATGAGTTGGGTTTATTTGCAATCTTTGATGGCCACTCAGGTCACAGTGTACCAGATTACTTGAGGTCTCATTTGTTTGATAATATCTTGAAAGAGCCTAACTTCTGGACAGAACCTGCTGATGCTGTCAAGAGAGCATATAGTAAAACTGATTCTACCATTTTAGACAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAGCAATATTGATCAACTGTCAGAAGCTAGTGGTGGCAAATATTGGGGATTCTCGGGCTGTCATATGCAAGAATGGCGTGGCCAAACAACTATCAGTGGATCATGAACCAAGCGTAGAAAGTGAGGATATCAGAAACAGAGGTGGTTTTGTGTCAAACTTCCCAGGGGACGTTCCACGTGTTGATGGTCAGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCCTGAAGAAACACTTGAGCTCAGAACCACATGTGATTATGGAGAAGatagatgatgatgatgcagAGTTTGTTATATTGGCCAGTGATGGGTTATGGAAGGTAATGTCAAATCAAGAAGCGGTTGATGCTATTAGAGATATAAAGGATGCTCGGTCTGCAGCAAAGCTCCTTACTGAAGAAGCACGGAACAGGAAAAGCTCAGATGATATCTCTTGCGTTGTTGTGAAATTTCAGTGA 852 0.4096 MAGREILHKMKEKVLGSSDPDSGKGKSKMKKHITHGFHLVKGKSGHAMEDFVVAQFKQVDSNELGLFAIFDGHSGHSVPDYLRSHLFDNILKEPNFWTEPADAVKRAYSKTDSTILDKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVICKNGVAKQLSVDHEPSVESEDIRNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKKHLSSEPHVIMEKIDDDDAEFVILASDGLWKVMSNQEAVDAIRDIKDARSAAKLLTEEARNRKSSDDISCVVVKFQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1771 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 282 IPR001932 -
Ssu3g1771 283 Pfam Protein phosphatase 2C 46 275 IPR001932 -
Ssu3g1771 283 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 283 - -
Ssu3g1771 283 PANTHER PROTEIN PHOSPHATASE 2C 1 283 IPR015655 GO:0004722|GO:0006470
Ssu3g1771 283 SMART PP2C_4 24 280 IPR001932 -
Ssu3g1771 283 CDD PP2Cc 35 282 IPR001932 -
Ssu3g1771 283 SUPERFAMILY PP2C-like 29 282 IPR036457 -
Ssu3g1771 283 Gene3D - 28 283 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1771 Ssu-Chr3 54825323 54828682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1771 1 283 PP2C-type Phosphatase Gene Family AT3G15260 77.241 1.02e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1771 K17506 - gmx:100787942 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1771 3 54825323 54828682 Ssu3g1771 3 54825323 54828682 ECH