Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1770 ATGGAGCCTGTGGTCCACACCCTTTGCACCTCCTTTTCTGCCTTTCTGCTTCATATAAACTCCCTCTTTCACTCCATTGCTCCAAAAAGTCCAGGCTCAACAAGTTCACTTGCTCCTTCATCATTGTCACCATTACCACCCCTTTGCACAATGGAGGCCAGGAGTGTGGAGAGGAAGAAAGCATTGGTTGAGAAGGTGAGAAAGAATAGCACAGTGGAAGAGGAAGTGGAGAATGAAGTGGAAGAGGAGGATGAAAGTAGTACTAGTCTCacagaagaagagaagaagaaaggggttagtagtagtggtggtggtgggagaAAAGGATCAAGTGGGGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTGAGTGATGCAAAGAGGTACCATCGCCGCCACAAGGTGTGTGAGTTCCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATCTGTCAGAGTTTGATGAAGCTAAGAGAAGCTGCCGCAGACGGTTGGCCGGACACAACGAACGGCGCCGGAAAAGCAACCCAGAAGTTGCCAATGAGGGCAGCAGCCACAGCAGCAAAGGCCAGCCCCCTAAGGAAACAACACACTGCAGGCTTGCTGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTATAAGTCTTTCAATATCAGATGA 738 0.4715 MEPVVHTLCTSFSAFLLHINSLFHSIAPKSPGSTSSLAPSSLSPLPPLCTMEARSVERKKALVEKVRKNSTVEEEVENEVEEEDESSTSLTEEEKKKGVSSSGGGGRKGSSGGGGGVSPPSCQAERCGADLSDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLSEFDEAKRSCRRRLAGHNERRRKSNPEVANEGSSHSSKGQPPKETTHCRLADERGRIQMNLPGSSGYKSFNIR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1770 245 Coils Coil 73 93 - -
Ssu3g1770 245 Pfam SBP domain 122 195 IPR004333 GO:0003677
Ssu3g1770 245 SUPERFAMILY SBT domain 120 200 IPR036893 GO:0003677|GO:0005634
Ssu3g1770 245 MobiDBLite consensus disorder prediction 63 125 - -
Ssu3g1770 245 Gene3D - 113 183 IPR036893 GO:0003677|GO:0005634
Ssu3g1770 245 MobiDBLite consensus disorder prediction 186 245 - -
Ssu3g1770 245 ProSiteProfiles Zinc finger SBP-type profile. 119 196 IPR004333 GO:0003677
Ssu3g1770 245 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 54 245 IPR044817 GO:0003677
Ssu3g1770 245 MobiDBLite consensus disorder prediction 201 215 - -
Ssu3g1770 245 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 54 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1770 Ssu-Chr3 54821382 54822731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1770 50 209 SBP-box Gene Family AT3G60030 50.000 1.07e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu3g1770 SBP 8.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1770 - - gmx:100787416 278.485