Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1769 ATGGCTGATATAGCAGGTCTGGCTGAGGCTGCAGGGGCAAGGTTTAGTTCATTGGAGCTCATTGGACAGGGATCATTTGGCGACGTCTATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCagaggatgaaattgagGACATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATCTCCGTACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTCCAATCAGGTCCCCCACTTGATGAAATGTCAATTGCTTGCATTCTACGTGATTTGCTTCATGCAATTGATTACCTACATAATGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGACTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAGACCTTTGTAGGAACACCATTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAgGCAGATATCTGGTCTCTGGGGATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAGCTTCTTAGACATCGTTTCATTCGGAATGCTAGGAAGAGTCCAAAGCTATTAGAGAGAATAAGGGAGCGTCCAAAGTTCCAAATAAAGGAAGATCAGGTGACACCTAGAAATGCTTCGAGGGGGATGGGGGAGGCATCTGATACTATTAAGGTTGCAAAAGATTTAAGGGGTGACGAAACTAATCAGCCTAGTGGCCAAGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACCTTTCGTAGTGTGTCACGACCACCTCAGTTTAGAGATAAGAAAACTGAAGTTTCAAATCATCAGCTTAACCAAAGAAAAAGTTCAGAGAGTGGCTATCAAGGGGCATCTGCCAATGAAAGTGCACTTAATGAGTCGCTAGAAACTTCTTTTGGAAAAGATCTTGGAGTTCCCTACCATGATGAACATCCGGATAATCACCTTGAAGATGATGAATTGTCTGGGAATGGATCAGGAACTGTTGTTATTCGGTCTCCAAAAGGACCACAGCCATCACTGTTTCGTGACCAAAGTTCCCGGTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTAGTAGTGGAACTGTTGTTTTGCGTAGCCAGCACGATGATTCTGATTCTCCACAGACACCAAGGTCCCGACTGCGACTTAATAGCAGAAATTTAAATGCCTCACTGGAAGATAGTGCTACAAATCTTGCCGagGCAAAGGCTGCTATCCAAGGCGGATTAAGGAAAGTAAATTCTCGGGAGAGATTTGTGCTGGGAAAACTCAACAATGATGTACAGGCAAGCAGGAGAGATCAAATGTCAAGCAGCTCTGATTCTTCCAGACCATCTCGAGAATACATTGATCCACAAAAGGGAATTTTGAGATCACATTATCCTAGTGATGATGAAGAAAATGCCAAAATAATCTCATCCTCTGTGCCGTTATCAGTTTTGCTTATTCCTTCATTAAAAGAGGCTATTGCTGATGATCCAGACGGGTCAATTGTGCAAATTGTTATCGATGCTCTTGTAAACATGGAGAGGACAAAGCCCCAATCCTGTGATGCTCTTGTCAAAAAGTTGCTTCAGCGGTTGGCAAGTTCAAAGGAATCTTCATTGAAGCACCTGCAAGAACTGGCTGGCCAAATATTCAGCAAGACCAAGTCAGCTGAAGAAACCCGAAATGCAGAGCCTGATAAcaagaagaaacaaaacaagGAACTTCATTCAAATAGCAATTTAAGCCCTCTCGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAACCTCACGCGATCTAAATCCGGCTTGA 2103 0.417 MADIAGLAEAAGARFSSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHNEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKFQIKEDQVTPRNASRGMGEASDTIKVAKDLRGDETNQPSGQGKTLKSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKTEVSNHQLNQRKSSESGYQGASANESALNESLETSFGKDLGVPYHDEHPDNHLEDDELSGNGSGTVVIRSPKGPQPSLFRDQSSRSSSSYASFEDASSSGTVVLRSQHDDSDSPQTPRSRLRLNSRNLNASLEDSATNLAEAKAAIQGGLRKVNSRERFVLGKLNNDVQASRRDQMSSSSDSSRPSREYIDPQKGILRSHYPSDDEENAKIISSSVPLSVLLIPSLKEAIADDPDGSIVQIVIDALVNMERTKPQSCDALVKKLLQRLASSKESSLKHLQELAGQIFSKTKSAEETRNAEPDNKKKQNKELHSNSNLSPLARFLLSRWQGQTSRDLNPA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1769 700 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Ssu3g1769 700 MobiDBLite consensus disorder prediction 525 555 - -
Ssu3g1769 700 MobiDBLite consensus disorder prediction 651 679 - -
Ssu3g1769 700 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Ssu3g1769 700 MobiDBLite consensus disorder prediction 654 672 - -
Ssu3g1769 700 CDD STKc_MST3_like 14 287 - -
Ssu3g1769 700 MobiDBLite consensus disorder prediction 319 352 - -
Ssu3g1769 700 MobiDBLite consensus disorder prediction 424 471 - -
Ssu3g1769 700 MobiDBLite consensus disorder prediction 287 306 - -
Ssu3g1769 700 SUPERFAMILY Protein kinase-like (PK-like) 14 297 IPR011009 -
Ssu3g1769 700 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1769 700 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1769 700 MobiDBLite consensus disorder prediction 401 418 - -
Ssu3g1769 700 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 698 - -
Ssu3g1769 700 MobiDBLite consensus disorder prediction 529 547 - -
Ssu3g1769 700 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1769 700 MobiDBLite consensus disorder prediction 368 394 - -
Ssu3g1769 700 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 698 - -
Ssu3g1769 700 Coils Coil 41 68 - -
Ssu3g1769 700 MobiDBLite consensus disorder prediction 315 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1769 Ssu-Chr3 54744681 54760105 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1769 1 697 MAP Kinase Kinase Kinase Kinase AT3G15220 66.286 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Ssu3g1769 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1769 K08838 - gmx:100786501 1231.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1769 3 54744681 54760105 Ssu3g1769 3 54744681 54760105 ECH