Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1766 ATGATGCCACCCATTGTGCAACTACCACCATCCCCCACCATGCAAACAAGCACCATCGCAAGCACCCACCTCCACCAGCACCTACCACCGACAAGCGCGTGCCCACCATTGACGACCATGGTTGCAGATTTTGGTGTTTCTGCACAGTTAACAAGAACTATATCAAGGAGAAAgACCTTTGTAGGAACACCATTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAGGAATCATCACTCTGTATCTTGTTTATACAGGCATATATCTGGTCTCTGGGGATTACTGCAATAGAGATGGCAAAAGGGGAGCCTTCGCTTGCTGATCTTCATCCAATGAGAGTGCTTTTCATCGTACCCCGAGAGAATCCACCACAACTAGATGAACACTTTTCTCCCTATATGAAAGAATTTGTTTCATTGTGCTTGAAGAAGGTTCCTGCTGAGGCAAGTAGGCCAAATGGTAAGGAGCTTCTAAGACATCGTTTCTATTGGAATGCTAGGAAGAGTCCAAAGCTATTGGAGAGAATAAGTTATGAGCAGCGTAAAAAGTTCCAAATAAAGGAAGATCAGGGGACGCCTAGAAATGCCCCGAGGGGGATGGGTGAGGCATCTGATACTATTAAGCTTAACCAAAGAAAAAGTTCAGAGAGTGGCTATCAAGGGGCATCTGCCAATAAAAGTGTACTTAACGAGTCACTAGAAACTTCTTTTGGAAAAGATCTTGGAGTTCCCTACCATGATGAACATCCGGATAATCACCTTGAAGATGATGAATTGTCTGGGAATGGATCAGGAACTGTTGTTATTCGGTCTCCAGAAGGACCACAGCCATCACTGTTTCGTGACCACAGTTCCcggcatggttctaaattgcgCTATGCTTCTTTTGGAGATGCTTCTACTAGCGGCACTGTTGTTTTGCGTAGCCAGCATGATGATTCTGATTCTCCACAGACACCAAGGTCCCGACTGGGATTTAATAGCAGAAATTTAAATGCCTCAGTGGAAGATAGTGCTACAAATCTTGCTGaggCAAAGGCTGCTATCCAAGGCAGATTAAGGAAAGTAAATTCTCAGGAGAGATTTGCGCTGGGAAAACTCAACAATGATGTACAGGAAAGCAGGAGAGATCAAATGTCAAGCAGCTCTGATTCTTCCAGACCATCTCGAGAATACATTGATCCACAAAAGGGAATTTCGAGATCACATTATCCTAGTGATGATGAAGAAAATGGCAAAATAATCTCAACCTCTGCTATTGCTGATGATCCTGACGGGTCAATAGTGCAAATTGTTATCGATGCTCTTGTAAACATGGAGAGGACAAAGCCCAAATCCTGTGATGCTCTTGTCAAAAAGTTGCTTCAGCGGTTGGCAAGCAAGACCAAGGCAGCTGAAGAAACCCGAAATGCAGAGCCTGATAAcaagaagaaacaaaacaagGAACTTCATTCAAATAGCAATCTAAGCCCTCTCGCAAGATTTCTTCTCTCAAGATGGCAAAGCCAAACCTCACGGGATCTAAATCCAGCTTGA 1551 0.4268 MMPPIVQLPPSPTMQTSTIASTHLHQHLPPTSACPPLTTMVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKESSLCILFIQAYIWSLGITAIEMAKGEPSLADLHPMRVLFIVPRENPPQLDEHFSPYMKEFVSLCLKKVPAEASRPNGKELLRHRFYWNARKSPKLLERISYEQRKKFQIKEDQGTPRNAPRGMGEASDTIKLNQRKSSESGYQGASANKSVLNESLETSFGKDLGVPYHDEHPDNHLEDDELSGNGSGTVVIRSPEGPQPSLFRDHSSRHGSKLRYASFGDASTSGTVVLRSQHDDSDSPQTPRSRLGFNSRNLNASVEDSATNLAEAKAAIQGRLRKVNSQERFALGKLNNDVQESRRDQMSSSSDSSRPSREYIDPQKGISRSHYPSDDEENGKIISTSAIADDPDGSIVQIVIDALVNMERTKPKSCDALVKKLLQRLASKTKAAEETRNAEPDNKKKQNKELHSNSNLSPLARFLLSRWQSQTSRDLNPA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1766 516 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1766 516 MobiDBLite consensus disorder prediction 379 394 - -
Ssu3g1766 516 Gene3D Transferase(Phosphotransferase) domain 1 35 202 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 313 336 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 466 495 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 189 231 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 466 488 - -
Ssu3g1766 516 SMART serkin_6 5 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1766 516 SUPERFAMILY Protein kinase-like (PK-like) 40 174 IPR011009 -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 212 231 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 395 415 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 369 416 - -
Ssu3g1766 516 Coils Coil 456 476 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 244 292 - -
Ssu3g1766 516 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 40 229 - -
Ssu3g1766 516 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 252 514 - -
Ssu3g1766 516 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 40 229 - -
Ssu3g1766 516 MobiDBLite consensus disorder prediction 246 263 - -
Ssu3g1766 516 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 252 514 - -
Ssu3g1766 516 Pfam Protein kinase domain 40 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1766 Ssu-Chr3 54250808 54258404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1766 41 514 MAP Kinase Kinase Kinase Kinase AT1G53165 46.786 1.15e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Ssu3g1766 Pkinase 6.4e-13 CL0016