Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1762 ATGACCAATACAAAATGGCTGAACACCCGTGGAGTAGATGAAGAGAACTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGACATCTTTGTTTGACTTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGCTTACTGGATGCTCTATGTGAGCGATTGAAGCCTAGTTTATATACAAAGGGCACTTGCATAGTCAAGGAAGGGGATCCAGTAAATGAGATGCTCTTCATCATACGTGGGCGTCTAGAGCGTGTTACTACTTACTACAGATGGTGGAAGAAGTGGCTTTTTCAACAAAGGTCTTCTGACGGAAGCTGA 336 0.4315 MTNTKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLTLVRRVPLFANMDERLLDALCERLKPSLYTKGTCIVKEGDPVNEMLFIIRGRLERVTTYYRWWKKWLFQQRSSDGS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1762 111 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 4 93 - -
Ssu3g1762 111 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 93 - -
Ssu3g1762 111 CDD CAP_ED 43 93 IPR000595 -
Ssu3g1762 111 Gene3D Jelly Rolls 8 106 IPR014710 -
Ssu3g1762 111 ProSiteProfiles cAMP/cGMP binding motif profile. 43 89 IPR000595 -
Ssu3g1762 111 SUPERFAMILY cAMP-binding domain-like 4 91 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1762 Ssu-Chr3 53998114 53998573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1762 5 93 Ion Channels AT1G19780 89.888 2.76e-51 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1762 K05391 - gmx:100810453 166.007