Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1754 ATGGCTCCGAGGGATGGCAGATCCAACGTTGTCGCCGTACCCGACCCGACCCACAGAGAGATCCGATACAGAGGCGTCAGAAAGCGACCGTGGGGCCGCTACGCCGCCGAGATCCGCGACCCGGGGAAGAAGACCCGGGTCTGGCTAGGCACCTTCGACACCGCGGAGGAGGCCGCGCGTGCCTACGACGCGGCGGCGCGTGAGTTCCGCGGCGCGAAGGCGAAGACCAATTTCCCCTCGCACGCTCGTAGCAGCCCGAGCCAGAGCAGCACCCTCGAGTCTTcctcgccgccgccgccgctgGACCTCACTCTCGCGCCGCTCGCCGCCGCCGGCGCGTTGGCGTTCCCGGTGGCCCGCCCGGTCGCGTTCTTCGACGCGTTCGCGCGGGCCGAGATGTGCGCCGCGTTCGATCTGCCGGTGGCGGCGCTCCGCCGAGACGGCGGCGGAGCGCAGAGCGACTCCGATTCGTCCTCGGTCGTGGACTACGAGCGGGTCCCACATCGGAGAGTCTTGGATCTTGACCTTAATGTCCCTCCTCCGCCCGAGGTTGCCTGA 558 0.6649 MAPRDGRSNVVAVPDPTHREIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPSHARSSPSQSSTLESSSPPPPLDLTLAPLAAAGALAFPVARPVAFFDAFARAEMCAAFDLPVAALRRDGGGAQSDSDSSSVVDYERVPHRRVLDLDLNVPPPPEVA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1754 185 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Ssu3g1754 185 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Ssu3g1754 185 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 118 170 - -
Ssu3g1754 185 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 106 - -
Ssu3g1754 185 PANTHER ERF FAMILY PROTEIN 118 170 - -
Ssu3g1754 185 PANTHER ERF FAMILY PROTEIN 1 106 - -
Ssu3g1754 185 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Ssu3g1754 185 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Ssu3g1754 185 MobiDBLite consensus disorder prediction 73 99 - -
Ssu3g1754 185 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Ssu3g1754 185 MobiDBLite consensus disorder prediction 78 98 - -
Ssu3g1754 185 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Ssu3g1754 185 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Ssu3g1754 185 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1754 Ssu-Chr3 53629995 53630552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1754 12 126 AP2-EREBP Transcription Factor Family AT3G15210 57.746 4.31e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu3g1754 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1754 K09286 - gmx:100786709 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2106 3 69265225 69265902 Ssu3g1754 3 53629995 53630552 ECH
Ssu3g1754 3 53629995 53630552 Ssu1g0459 1 10606951 10607619 ECH
Ssu3g1754 3 53629995 53630552 Ssu3g1754 3 53629995 53630552 ECH