Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1751 ATGGACAGCTACTACCATCACCACACCCACTTTGACAACAACACTGAGCCACATTTACCTCCCGGCTTCCGATTCCACCCCACAGACGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGCACCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAGCCATGGGAGCTTCCTGAGAAAGCTACGATGGGTGAGAAGGAATGGTACTTCTTTAGCCTTCGTGACCGAAAGTACCCAACTGGGTTACGCACCAATAGGGCCACTGAGGCTGGTTATTGGAAAGCCACGGGGAAAGACAGAGAGATCTATAGCTCAAAAACTTGTTCACTAGTTGGCATGAAGAAAACCTTGGTTTTCTACAGAGGAAGGGCTCCAAAGGGTGAGAAAAGCAACTGGGTCATGCATGAATATCGCTTAGAAGGCAAATTCGCTTACCACTACCTCTCTAGAAGCTCCAAGGACGAGTGGGTGATATCACGTGTGTTTCAGAAGACCGCCACAGGCGGTGGCTCCACCGTGTCGGCCGCCACCAACAGCGGTTCTAAGAAAACAAGAATGAGCACATCCAACGCTAGTAGTAACATGAGTCTCTACCCTGAACCGGGTTCACCCTCTTCTATTTACCTTCCACCACTTCTAGAATCTTCTCCTTACACCGCCGCCAGCAGCACCGCCGCAACATTCAACGACCGAGAAAGCTGCTCCTTCGACAGCGCCGCCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATGTCCACCGCCGCCGCCTTCGACCACCTCGTTCCGCCGCCGGAGCCGCCGCTCGACCCGTTCTCTCGGTTTCACAGGAACGTTAACGGCGTCGCTGCGTTCCCGAGCTTAAGGTCGTTGCATGACAACCTCCAGCTGCCGTTCTTTTTCCCTCCGGCGGGCCACGCCGCCGGCGCTGACGTGGCGGGATTTGGCGCCGTCGGGAACTGGCCGGGGCCGGAGGAGCAGAGGGTGGTTGATGGTGGTCCCGGCATGGCGATTGTACCGTCCGAGTTGGATTGTATGTGGGGCTATTGA 1071 0.5518 MDSYYHHHTHFDNNTEPHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIVEVDLNKCEPWELPEKATMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKTATGGGSTVSAATNSGSKKTRMSTSNASSNMSLYPEPGSPSSIYLPPLLESSPYTAASSTAATFNDRESCSFDSAANQREHVSCFSTMSTAAAFDHLVPPPEPPLDPFSRFHRNVNGVAAFPSLRSLHDNLQLPFFFPPAGHAAGADVAGFGAVGNWPGPEEQRVVDGGPGMAIVPSELDCMWGY 356
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1751 356 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Ssu3g1751 356 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Ssu3g1751 356 MobiDBLite consensus disorder prediction 175 203 - -
Ssu3g1751 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 13 318 - -
Ssu3g1751 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 318 - -
Ssu3g1751 356 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Ssu3g1751 356 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu3g1751 Ssu-Chr3 53503273 53505356 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1751 1 356 NAC Transcription Factor Family AT5G53950 51.938 6.86e-116 339
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g1751 NAM 1.2e-40 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1751 - - gmx:100788671 605.52
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1751 3 53503273 53505356 Ssu3g1751 3 53503273 53505356 ECH