Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1749 ATGGGTCGCCCACCCAGTAATGGAGGCCCAGCCTTTCGCTTCACTCAGCCTGAGGTATCAGAAATGGAGGCTATTCTTCAAGAACACAACAATGCAATGCCAGCACGTGATGTTCTTACAGCTCTTGCAGAGAAGTTCAGTGAATCACCAGGTCGTAAAGGCAAGATTACAGTGCAGATGAAGCAAGTTTGgaattggtttcaaaataagCGGTATGCAATAAGAGCAAAATCAAGTAAGACTCCTGGGAAGTTAAATATTACACCTATGCCTCGGGATGATTCAACCCCAGTAAGGAGTATGCCTCAACAACCAACAGCTGCTCCAATTCCCGTTGCTTCCGCTTCAGTTCCAACAGCAGTAAAAGCAACTCCAGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTGCCTTTCTATCACACAGATATTTGGAGACCACTGACCCGGAAGTGCTGGTACGATTTGCTGGTTTTGGACCCGAGGAAGATGAGTGGATTAACATTCGAAAGCATGTCAGGCCACGCTCTTTGCCATGTGAATCATCAGAATGTGTTGTAGTCATCCCTGGCGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGGCGTAGGCATGATGTACGAGGCTGTCGTTGTAGATTTCTGGTTCGTTATGATCATGATCAGTCAGAGGAAATTGTGCCTCTTAGGAAGATTTGTCGCAGGCCTGAAACCGATTATCGGTTACAGCAACTTCATGCTGTGAATGAGGCAGCACCTGTGGATCAGCAAAAGACTGGCATGGATCCAGCAAATGTTAATGCCATGAGGGCTTCTGCTGAAACAGTGCCAAAGCAGCTGATTGCAGCAAACATTCACATGGAGACACCAGTTTTGCAAACAAATTTTCCTGAAACTATGGTTGTGGATCAAAAGAAAGCTGAAACAAATACTGATGTTCAAGCAGGAAATTCCATCATCACCCCAGGCAGTGCCCCATTTACTAACATCATTACTACAAGCTGTGTTCCTGAAGTCTCTAGTCAGACTCAGAACATGGTTGAATGA 1116 0.4453 MGRPPSNGGPAFRFTQPEVSEMEAILQEHNNAMPARDVLTALAEKFSESPGRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDSTPVRSMPQQPTAAPIPVASASVPTAVKATPENSVMEFEAKSGRDGAWYDVAAFLSHRYLETTDPEVLVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHAVNEAAPVDQQKTGMDPANVNAMRASAETVPKQLIAANIHMETPVLQTNFPETMVVDQKKAETNTDVQAGNSIITPGSAPFTNIITTSCVPEVSSQTQNMVE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1749 371 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Ssu3g1749 371 CDD homeodomain 13 75 IPR001356 GO:0003677
Ssu3g1749 371 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 332 IPR039276 -
Ssu3g1749 371 Gene3D - 189 261 - -
Ssu3g1749 371 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 332 - -
Ssu3g1749 371 SMART HOX_1 7 81 IPR001356 GO:0003677
Ssu3g1749 371 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Ssu3g1749 371 MobiDBLite consensus disorder prediction 81 112 - -
Ssu3g1749 371 Gene3D - 10 84 - -
Ssu3g1749 371 Gene3D - 127 188 - -
Ssu3g1749 371 Pfam SAWADEE domain 130 256 IPR032001 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1749 Ssu-Chr3 53327121 53338114 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu3g1749 SAWADEE 8.2e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1749 - - gmx:100783895 650.203