Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1743 ATGGGGGATTTCATCTTCTCCTTCAAGACCCAGGAACAAGTCCACCAAAGAGCAAAACACAACAAGAAGAGGCTAACCGAAGACCAGGTTGCTGTCCTTGAGAAGTGCTTTGCCTCCAACATGAAGCTTGAGCCCGAGCAGAAGTTCCGCCTTGCAAACCAACTTGGTGTGCCTCCAAGGCAGGTGGCCATTTGGTACCAAAACAAGAGGGCCCGCTGGAAGACTCAGAGCCTTGAGGTGGACCACGGTGTGCTTCAGGCAAAGCTAGAGAATGTGATGGCTGAAAAGAAGCAGCTAGAGAAAGACGTGGAACGGCTCAAAGCGGAGCTGAAGAAAGCTCAAGAGATGCTGCTAATTAGCAACGTCAAAGGTGGGGACCACACTAACAACAATGCTTCTTGTGAATTTTCAACTTCTTTTGAAGAGGGAGGGAGCTCAGGGGCGCTTGATGACGTCACTCATCATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTCTATGCTTACTTCATGGGTGCAAATTATGGGTCGGGCTCGCATGAGAAAAGGGCATAA 567 0.4974 MGDFIFSFKTQEQVHQRAKHNKKRLTEDQVAVLEKCFASNMKLEPEQKFRLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKAELKKAQEMLLISNVKGGDHTNNNASCEFSTSFEEGGSSGALDDVTHHHECWQSGEVMQVEELYAYFMGANYGSGSHEKRA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1743 188 SMART HOX_1 18 80 IPR001356 GO:0003677
Ssu3g1743 188 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Ssu3g1743 188 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Ssu3g1743 188 Coils Coil 82 123 - -
Ssu3g1743 188 Gene3D - 15 81 - -
Ssu3g1743 188 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Ssu3g1743 188 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 183 IPR045224 GO:0003700
Ssu3g1743 188 Pfam Homeodomain 21 74 IPR001356 GO:0003677
Ssu3g1743 188 CDD homeodomain 19 77 IPR001356 GO:0003677
Ssu3g1743 188 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 11 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1743 Ssu-Chr3 53276917 53277483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1743 12 183 Homeobox Transcription Factor Family AT5G53980 43.931 1.46e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu3g1743 Homeodomain 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1743 - - ccaj:109788811 313.923