Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1742 ATGAAGCTTGAGCCCGAGCAGAAGTTCCGCCTTGCAAACCAACTTGGTGTGCCTCCAAGGCAGGTGGCCATTTGGTACCAAAACAAGAGGGCTCGCTGGAAGACTCAGAGCCTTGAGGTGGACCACGGTGTGCTTCAGGCAAAGCTAGAGAATGTGATGGCTGAAAAGAAGCAGCTAGAGAAAGACGTGGAACGGCTCAAAGCGGAGCTGAAGAAAGCTCAAGAGATGCTGCTAATTAGCAACGTCAAAGGTGGGGACCACACTAACAACAATGCTTCTTGTGAATTTTCAACTTCTTTTGAAGAGGGAGGGAGCTCAGGGGCGCTTGATGACGTCACTCATCATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTCTATGCTTACTTCATGGGTGCAAATTATGGGTCGGGCTCGCATGAGAAAAGGGCATAA 447 0.4989 MKLEPEQKFRLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKAELKKAQEMLLISNVKGGDHTNNNASCEFSTSFEEGGSSGALDDVTHHHECWQSGEVMQVEELYAYFMGANYGSGSHEKRA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1742 148 ProSiteProfiles 'Homeobox' domain profile. 1 36 IPR001356 GO:0003677
Ssu3g1742 148 Pfam Homeodomain 2 34 IPR001356 GO:0003677
Ssu3g1742 148 CDD homeodomain 1 37 IPR001356 GO:0003677
Ssu3g1742 148 ProSitePatterns 'Homeobox' domain signature. 11 34 IPR017970 GO:0000981|GO:0006355
Ssu3g1742 148 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 143 IPR045224 GO:0003700
Ssu3g1742 148 SUPERFAMILY Homeodomain-like 3 44 IPR009057 -
Ssu3g1742 148 Coils Coil 42 83 - -
Ssu3g1742 148 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 1 143 - -
Ssu3g1742 148 Gene3D - 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1742 Ssu-Chr3 53236969 53237415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1742 2 143 Homeobox Transcription Factor Family AT5G53980 41.958 2.59e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu3g1742 Homeodomain 8.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1742 - - gsj:114378167 251.136