Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1741 ATGGATCAAATGAGTCAACAAAGGCGTGGCTATTTCAGAGGCACCAACGACTCTCGGCCTAATATCTGCATGGTGGTGACAGCTTCAGGGAGCGCAGCTAATCTGGATTCCCATTATTTGCTAGATGATGCTTATGACAATGGTATGATGTATGGCATGATGCAATATAATGGAATTCAGCATGCCAACTTATATTATTCTGGCATGGATCCTTCATCTGGTAATGCTGCATCTCTAAATCACAATGGAGCATACAAATGGAAAAATGCTGAAGAGTTCAGAAGAAATCATCAATATTTCAATGCCTTAGCCAGTTCTTCAGTTGCTCCCCCTAATGTAAGACACACTGAAAATGGCATCCCCTCACTACCACATTGTAGTTCGCGGAGCAGATCAGGGGAGTGTATGATGGTGCATGACCATAACCATCTGATTCGAAGAAACTATTTAGGTCAGCACTTTCAACCAGCTGCTCCTTCCTGGCCGGACCAACAGTTGAATAGCAATAATAGTGATGGTCGTGCTTTGTCTTGGCATCAGTCTCCTCCAATGCCCTATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGTGAATGCAAGAATGGGTCTGCAGAGATATCATGATTCAGCTGGCAGCAGAAGTGGCCTCAGATTTCCCCATCCTCCTACTGTCAACCCACAGTACCATAGCTTTCATCATCAAACACAGCCTGTGCAAGAGATGAGAGGTCACTCCATCAACTTTCATCCTCCAGTAACTGCACCTTCACATAGAGTTCCAACAAATCCTTCACACAATTCTTCAATCCTCACACAAAATGCTGTTGAGATGGGTGCTAGGCATGTTGTCCCTTCACCATTTGCAGGTGCACGTTTATACCGACCTCATAGAGGCAACATGCACGAGACAACTCTTCCTCCCATGGCCTTTCTCCAAGTTGATGATGTTTCTTTACTAGTTGACCATCATAGTGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGTGAGCGGATTGGCAACGTAAACACGGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAAACTTATATACTACCTACGAATGCTATTAACTTGGAGGAGGGAGCTTCTGAGGAACAAAAAACTGATTCTTGCATAATATGCCAGGATGAATATAAGAACCAAGAGAAGATTGGAATTCTTCAATGCGGGCACGAATATCACGCAGATTGTTTAATGAAATGGTTACTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTACTGGAGAGAAGTGTGTATAA 1326 0.4306 MDQMSQQRRGYFRGTNDSRPNICMVVTASGSAANLDSHYLLDDAYDNGMMYGMMQYNGIQHANLYYSGMDPSSGNAASLNHNGAYKWKNAEEFRRNHQYFNALASSSVAPPNVRHTENGIPSLPHCSSRSRSGECMMVHDHNHLIRRNYLGQHFQPAAPSWPDQQLNSNNSDGRALSWHQSPPMPYVQAPSANGSSLVNARMGLQRYHDSAGSRSGLRFPHPPTVNPQYHSFHHQTQPVQEMRGHSINFHPPVTAPSHRVPTNPSHNSSILTQNAVEMGARHVVPSPFAGARLYRPHRGNMHETTLPPMAFLQVDDVSLLVDHHSDMRLDIEDMSYEELLALGERIGNVNTGLSEEMITSQMKTKTYILPTNAINLEEGASEEQKTDSCIICQDEYKNQEKIGILQCGHEYHADCLMKWLLVKNVCPICKSEALTTGEKCV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1741 441 ProSiteProfiles Zinc finger RING-type profile. 389 430 IPR001841 -
Ssu3g1741 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 434 IPR013083 -
Ssu3g1741 441 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 83 438 - -
Ssu3g1741 441 Pfam Ring finger domain 387 430 IPR001841 -
Ssu3g1741 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 83 438 IPR045191 GO:0061630
Ssu3g1741 441 SUPERFAMILY RING/U-box 388 433 - -
Ssu3g1741 441 SMART ring_2 389 429 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1741 Ssu-Chr3 53199792 53201967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1741 322 436 C3H Transcription Factor Family AT2G15530 50.862 5.60e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1741 K19041 - gmx:100779069 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1741 3 53199792 53201967 Ssu3g1741 3 53199792 53201967 ECH