Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1738 ATGAAAATCCTCTTCACCGTGAAGAAGCAGGTCGCTTACAGCATTTCATCCTTGGCCTATATTTGGTTGCATGGCATAGATAGAATCACCAAACAAGGTGACACCGCCTTTTCCCCATGTCAATGTTGGCGTCTTATCTTAGACAAATCTCAATTTCAAACGGTGGGCTCGGCTAAACGCGTAGATAAGTCAAAGACAAAAGAGAACATCGAAAGACAGCTAAAAGATCTGGATGTGCCATTGTTTGATCTGCTAACAATCACTACCGCCACCAACAATTTCTCGTTAAATAATAAGATAGGACAAGGTGGTTTTGGACCTGTATATAAGGGAAGATTAGTGGATGGGCGAGAAATTGCTGTCAAGAGACTTTCAAGCAGTTCTGGACAAGGAATAGCTGAGTTCATAACAGAAGTAAAACTGATATCAAAGCTTCAACACCGAAATCTGGTAAAGCTTCTTGGCTGTTGCATTCGTGGACAGgaaaaaatactagtatatgAATACATGGTTAATGGAAGCCTAGACTCCTTCATTTTTGATCAAATGAAAGGTAAATTTCTGGATTGGCCAAGACGctttcaaataatatttggaGTAGCTAGGGGGCTTTTGTATCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTAAAAGCAAGTAATGTTTTACTCGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAACTGAAGGAAATACAAATAGAGTAGTTGGAACTTATGGATACATGGCCCCAGAATATGCAGTTGATGGGctattttcaatcaaattagACGTTTTCAGCTTTGGTATTTTGTTGTTGGAGATTGTATGCGGGAATAAAAATAGAGCTCTCTGTCGTGGAAACCAGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGGATAATGCTTTACAGTTGATTGACTCAAGCATAAAGGACTCGTGTGTTATCCCAGAAGTACTGCAATGCATCCATGTTAGTCTCCTGTGCGTGCAACAATACCCGGAGGATAGGCCAACCATGACCTcagtaattcaaatgttaggGAGTGAGATGGAACTGGTTGAGCCAAAAGAGCCTGGTTTCTTTCCAAAGAGGATTTCAGATGAAGGAAATTTAAGTTCTAAGCTAAACCAAATGACTTCAAATGATGAACTAACCATTACCTCATTAAATGGCCGGTGA 1236 0.3803 MKILFTVKKQVAYSISSLAYIWLHGIDRITKQGDTAFSPCQCWRLILDKSQFQTVGSAKRVDKSKTKENIERQLKDLDVPLFDLLTITTATNNFSLNNKIGQGGFGPVYKGRLVDGREIAVKRLSSSSGQGIAEFITEVKLISKLQHRNLVKLLGCCIRGQEKILVYEYMVNGSLDSFIFDQMKGKFLDWPRRFQIIFGVARGLLYLHQDSRLRIIHRDLKASNVLLDEKLNPKISDFGMARAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKLDVFSFGILLLEIVCGNKNRALCRGNQTLNLVGYAWTLWKEDNALQLIDSSIKDSCVIPEVLQCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMELVEPKEPGFFPKRISDEGNLSSKLNQMTSNDELTITSLNGR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1738 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Ssu3g1738 411 Pfam Protein tyrosine and serine/threonine kinase 95 365 IPR001245 GO:0004672|GO:0006468
Ssu3g1738 411 Gene3D Phosphorylase Kinase; domain 1 53 169 - -
Ssu3g1738 411 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 62 410 - -
Ssu3g1738 411 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 62 410 - -
Ssu3g1738 411 ProSiteProfiles Protein kinase domain profile. 94 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1738 411 CDD STKc_IRAK 100 365 - -
Ssu3g1738 411 Gene3D Transferase(Phosphotransferase) domain 1 170 375 - -
Ssu3g1738 411 SUPERFAMILY Protein kinase-like (PK-like) 74 365 IPR011009 -
Ssu3g1738 411 SMART serkin_6 94 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1738 Ssu-Chr3 53073917 53079592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1738 59 382 Receptor kinase-like Gene Family AT4G23190 53.354 6.18e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1738 PK_Tyr_Ser-Thr 9.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1738 - - gmx:100807748 639.032