Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1734 ATGGCGAAGACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATTCGAGGCACCAACAAGATCGTGCGAGCTGGCGACTGCGTCTTGATGCGGCCCTCGGACACATCGAAGCCGCCCTACGTGGCGCGCGTGGAGAAGATTGAGCAGGACAACAGGAGCAACGTGAAGAGCGCACACACCATTGAAGGGAAGTGTGTGGTGCACTCGTTCAAGAACTACACCAAGCTCGAGAATGTGGGCGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCTTATAACCCGGACGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAACTAGACCATTTTGTATGTTCCGAATGTTCAACTGATGATGATATGAAGAAACCCCAAGCTACATTTTCTGTATCACCAGGAGCTGATGGCAAGaattcaaattttgaatttgcagGTGGAGCCCAAGCGACGGAGGAGAGGACCATAGTGCGATTTTGCAATAAGAATGAGCCATATGAATGTGATAATTCTGCGGGTAAGCATATGCTGCAACTGGAGCCGGCTTTGTCCAAGCAAGCAAGCTGA 675 0.4948 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVKSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSTDDDMKKPQATFSVSPGADGKNSNFEFAGGAQATEERTIVRFCNKNEPYECDNSAGKHMLQLEPALSKQAS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1734 224 Pfam PHD-finger 106 154 IPR019787 -
Ssu3g1734 224 SMART PHD_3 106 153 IPR001965 -
Ssu3g1734 224 SMART BAH_4 21 102 IPR001025 GO:0003682
Ssu3g1734 224 Gene3D - 1 60 IPR043151 -
Ssu3g1734 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 167 IPR013083 -
Ssu3g1734 224 PANTHER BNAC03G64850D PROTEIN 3 57 IPR045205 GO:0006325|GO:0035064
Ssu3g1734 224 PANTHER BNAC03G64850D PROTEIN 55 188 IPR045205 GO:0006325|GO:0035064
Ssu3g1734 224 ProSiteProfiles Zinc finger PHD-type profile. 104 155 IPR019787 -
Ssu3g1734 224 ProSitePatterns Zinc finger PHD-type signature. 107 152 IPR019786 -
Ssu3g1734 224 SUPERFAMILY FYVE/PHD zinc finger 98 156 IPR011011 -
Ssu3g1734 224 PANTHER OS08G0421900 PROTEIN 3 57 - -
Ssu3g1734 224 PANTHER OS08G0421900 PROTEIN 55 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1734 Ssu-Chr3 52944546 52950210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1734 104 159 Alfin-like Transcription Factor Family AT1G14510 33.929 2.81e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu3g1734 PHD 2.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1734 K25868 - gmx:100800993 348.206