Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1733 ATGTTCTGTGCAGGTATAGAAATGAGTCCAAAGAAATGGTTTAAGACGATTGTTAAATTGAAGAAACGGAAGGAAGACAAATCGAAACAAGCAGAGGTGCAATCTACCCCTGAAAAATCAAATGAGTCCTCCGAGGAGAAACAAGAAGACACTCATGAAGAGTCTAGTAGCATTCCCAATGAAGGTTTGGTGGTAGAAAGGACAGTTCCCAAGAGGTTGATAGAGGATATTGCTGCTACTCGAATTCAAAATGCATTTCGTGCATTTCTGGCAAGAAGAACATTGCACCATCTAAGGGGAGCAGTGAAATTTGAGGCTTTGATTCAAGATCACATGGCCAGAGAACAAACAGTAACTGCGCTAAACTACATACATTCTTGGATCAGAATACAGGACCAAATTAAAGCTCGCAGACTCTATATGATAACAGAAGCCAGGATTAAGCAAAAGAAATTGGAAAACCAGTTAAAACTTGAGGCCAAGATTCATGAGCTCCAGGTGGAATGGTGTGGAGGTTCTGAAACAATGGAAGAGATACTTTCCAGGGTACATCAGCGAGAAGAAGCAGCAGTCAAACGAGAGCGAGCTATGGCGTATGCCTTCTCTCATCAGTGGAGGCCCAATTGCATCCAGTATTTGGGCCAGGCTACTTACAGCCTTGGCAAAGAAAGCTGGGGTTGGAGCTGGAAGGAGAGGTGGGTAGCAGCCCGTCCTTGGGAAATCCGGGTTCTTTTTCAGGGGCCCATGACAAAGGAAATCAATGGCCAGCCACAGAGAAGCAAAGTAGACAAAAAAGGCCACAATGATAGCAAAGTGCCCTTGTCTAAATCTGAGTCGTCAAACGGAAAGCAAACtgagaaagggaaagaaaacaACATTCCAATGCTGTCAAAGTACAACCTAGCCAAATAA 912 0.4309 MFCAGIEMSPKKWFKTIVKLKKRKEDKSKQAEVQSTPEKSNESSEEKQEDTHEESSSIPNEGLVVERTVPKRLIEDIAATRIQNAFRAFLARRTLHHLRGAVKFEALIQDHMAREQTVTALNYIHSWIRIQDQIKARRLYMITEARIKQKKLENQLKLEAKIHELQVEWCGGSETMEEILSRVHQREEAAVKRERAMAYAFSHQWRPNCIQYLGQATYSLGKESWGWSWKERWVAARPWEIRVLFQGPMTKEINGQPQRSKVDKKGHNDSKVPLSKSESSNGKQTEKGKENNIPMLSKYNLAK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1733 303 PANTHER IQ-DOMAIN 10 8 291 - -
Ssu3g1733 303 MobiDBLite consensus disorder prediction 21 61 - -
Ssu3g1733 303 MobiDBLite consensus disorder prediction 257 272 - -
Ssu3g1733 303 Coils Coil 148 168 - -
Ssu3g1733 303 MobiDBLite consensus disorder prediction 21 56 - -
Ssu3g1733 303 ProSiteProfiles IQ motif profile. 75 103 IPR000048 GO:0005515
Ssu3g1733 303 MobiDBLite consensus disorder prediction 250 303 - -
Ssu3g1733 303 PANTHER IQ-DOMAIN 5-RELATED 8 291 - -
Ssu3g1733 303 MobiDBLite consensus disorder prediction 273 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1733 Ssu-Chr3 52834542 52837187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1733 14 242 IQD Protein Family AT3G15050 58.079 6.29e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1733 - - gmx:100810603 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1194 8 21319739 21322544 Ssu3g1733 3 52834542 52837187 ECH
Ssu3g1733 3 52834542 52837187 Ssu3g1733 3 52834542 52837187 ECH