Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1732 ATGAGAGGTGGCGGCGGCGAGATTGTGGAGGTGCAAGGCGGCCACATTGTCCGCGCCACAGGGCGCAAGGACCGCCACAGCAAGGTCTGCACCGCCAAAGGCCCCCGGGACCGCCGCGTGCGCCTCGCGGCGCACACCGCCATCCAATTCTACGACGTCCAGGACCGCCTCGGCTACGACCGCCCCAGCAAGGCGGTCGACTGGCTCATCAAAAAAGCCAAGGCGGCCATCGACGACCTCGCGGAGCTCCCGCCATGGAACCCCGCGGTCGCATCAATGCAGCAACCGCAGCAGCAGGAAATCGTCCACCGCGGAAACAAATCTCCCGCGGTGGACGACACGGTAATCGCCTTCGGTAGCCGCGGCGAGAGCGGGAGAGTTCCAGAACAATTCTCTCACCAGCAGTTAGAGGAGAGTGAAAATGCCCACAGCATCTCCAACAAGTACAACAGCGGTTCTGGTTTTCTGCCAGCGTCTCTGGACACCGATAACATTGCGGAAACAATTAAGACTTTTTTTCCTGTGGAGGCGACTACGACGTCGTTTCAGAGTTACCCGCCACCACCGCCGGATTTAGGGCAGCAAGATCTACGGCTCTCGTTGCAGTCCTTTCAGGACCCAATTATGCTTCACCACCAGCCTCAGAGCCACCACGAGCCGGGGCTCTTCGCCGGAACCGCCGCCGCGCTCGGCTTCGACGGCTGTTCCGGGTGGTCAGAGCACCAGCACCAGGAGGATCAGCGATTGCTCTATGCTGGGAACAGTGGCCACGGCGGTGGGTTCGTGTTCAACTCGCCGGCGCCGGTGCCGGCGCCGGCGTTTGGCCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGGTTCGTGCTTGGATAGACCCTTCGGTCGATCACCAttacaaccaccaccaccatcactacctCTCGCCGTTGATCCACCAGGGTTCCGTCGCGGGCGGCGGCGGATTCTCCCCCGCCGGTGGGTTCTCCGGCTTCCGCATTCCAGCACGAATTCAGGGTGAAGAGGAGCACGACGGCGTATCCGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1095 0.6027 MRGGGGEIVEVQGGHIVRATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDDLAELPPWNPAVASMQQPQQQEIVHRGNKSPAVDDTVIAFGSRGESGRVPEQFSHQQLEESENAHSISNKYNSGSGFLPASLDTDNIAETIKTFFPVEATTTSFQSYPPPPPDLGQQDLRLSLQSFQDPIMLHHQPQSHHEPGLFAGTAAALGFDGCSGWSEHQHQEDQRLLYAGNSGHGGGFVFNSPAPVPAPAFGQFFSQRGPLQSSNTPSVRAWIDPSVDHHYNHHHHHYLSPLIHQGSVAGGGGFSPAGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1732 364 PANTHER TRANSCRIPTION FACTOR TCP4 2 364 - -
Ssu3g1732 364 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Ssu3g1732 364 Pfam TCP family transcription factor 21 143 IPR017887 -
Ssu3g1732 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 364 IPR005333 GO:0003700
Ssu3g1732 364 MobiDBLite consensus disorder prediction 341 364 - -
Ssu3g1732 364 MobiDBLite consensus disorder prediction 338 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1732 Ssu-Chr3 52830795 52831915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1732 3 364 TCP Transcription Factor Family AT1G53230 50.777 2.14e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu3g1732 TCP 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1732 - - gmx:100800275 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1195 8 21324589 21325998 Ssu3g1732 3 52830795 52831915 ECH
Ssu8g0956 8 16235130 16236155 Ssu3g1732 3 52830795 52831915 ECH
Ssu3g1732 3 52830795 52831915 Ssu3g1732 3 52830795 52831915 ECH