Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1723 ATGGATCCGACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCACCGATTCCGACCCTCTGAAGCTCTCCCCCTCCGACGCGCGCAAGCTCATCGAGCGCTTCTCCCCGGATCAGCTCCTCGATATCCTCCAGGACGCGGTGGTCCGGCACCCCGACGTGCTCGCCGCCGTGCGCGCCGTCGCGGACCCCGACGTGTCCCAGCGGAAGCTCTTCATCCGTGGCCTCGGGTGGGACACCACCACCGACGGCCTCCGGTCGCTGTTCTCCGCCTACGGCGACCTCGAGGAGGCCGTCGTGATCCTCGACAAGGCCACCGGCAAGTCCAAGGGCTACGGCTTCGTCACGTTCCGCCACGTGGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGGCGCGTGACGGTCACGCAGCTCGCCGCGGCCGGGAACTCGGGCTCGGCCGCGAACGCCGCTGACGTGGCGCTCCGGAAGATCTACGTCGCCAACGTGCCGCCGGACCTCCCCGCCGACAAACTCCTCGCGCACTTCTCCGTCTACGGCGAGATCGAGGAGGGGCCGTTGGGGTTCGACAAGCAGACTGGGAAGTCCAAAGGGTTCGCTCTCTTCGTTTACAAGACTCCCGAGGGGGCGCAGGCTGCGTTGTTGGATCCCGTTAAGACTGTGGAGGGGAGGCAGTTGAGTTGCAAGTTGGCGATAACGGATGGGAAGCAGGGGAAGCGGGCCGGGCCGGACGGGGCCCAGGCCCATCATGGGAGTGTTCAGCATGGGCATGGGGATGGAGTGGGAGCGGGGATGGGAATGGGAATGGGAATGCCTCCTGCGGCGGGGTCTGGGCCGGGCCAGTATGGGGGCCCGGTTGGGTTGGGGTCTTATGGCGGGTTTGGCGGGCAGCCTCCGATGGGGAATCATCATCCTCTGAATTCGTCGAATCCCGTGCCGGGGTCTATGGGGGGTGCCGGCGGGTACGGGGCTGGGATGGGTGGGCCCTATGGTGGGTACGGTGGGCCTGGCTCGACGGGCTTCGGTGGTGCTGGTGGGCTGGGAGGAGGTAGTGGAGGTGTTGTTGCTGGTGGTGCTGGTGGTGGGCTTGGTGGTTCTGGGGGTGGTTCTTTGTATAGATTGCCGGGTTCGGGTGGAATgcctggtggtggtggtggtggagggtATCCGGAGGGTGGACACTATAGTTTATCAGCTTCGTCTGGGTACCAGAATCAGCATCACCCTCCTTCTGGGGCTTCGCCTGTGCCTAGGGTTCCGCAGGGTTCGATGTATCCAAATGTGCCCCCTTACTACTGA 1311 0.6392 MDPTKKRKLDENGFTDSDPLKLSPSDARKLIERFSPDQLLDILQDAVVRHPDVLAAVRAVADPDVSQRKLFIRGLGWDTTTDGLRSLFSAYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSAANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDGAQAHHGSVQHGHGDGVGAGMGMGMGMPPAAGSGPGQYGGPVGLGSYGGFGGQPPMGNHHPLNSSNPVPGSMGGAGGYGAGMGGPYGGYGGPGSTGFGGAGGLGGGSGGVVAGGAGGGLGGSGGGSLYRLPGSGGMPGGGGGGGYPEGGHYSLSASSGYQNQHHPPSGASPVPRVPQGSMYPNVPPYY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1723 436 MobiDBLite consensus disorder prediction 238 267 - -
Ssu3g1723 436 MobiDBLite consensus disorder prediction 1 15 - -
Ssu3g1723 436 SMART rrm1_1 69 141 IPR000504 GO:0003723
Ssu3g1723 436 SMART rrm1_1 161 233 IPR000504 GO:0003723
Ssu3g1723 436 MobiDBLite consensus disorder prediction 293 318 - -
Ssu3g1723 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Ssu3g1723 436 SUPERFAMILY RNA-binding domain, RBD 60 144 IPR035979 GO:0003676
Ssu3g1723 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Ssu3g1723 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Ssu3g1723 436 Gene3D - 151 273 IPR012677 -
Ssu3g1723 436 MobiDBLite consensus disorder prediction 401 415 - -
Ssu3g1723 436 CDD RRM_RBM24_RBM38_like 160 235 - -
Ssu3g1723 436 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g1723 436 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 398 - -
Ssu3g1723 436 MobiDBLite consensus disorder prediction 386 436 - -
Ssu3g1723 436 SUPERFAMILY RNA-binding domain, RBD 156 265 IPR035979 GO:0003676
Ssu3g1723 436 Gene3D - 49 150 IPR012677 -
Ssu3g1723 436 CDD RRM_RBM24_RBM38_like 68 142 - -
Ssu3g1723 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Ssu3g1723 436 PANTHER GEO13361P1-RELATED 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1723 Ssu-Chr3 52281309 52282619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1723 156 235 C2H2 Transcription Factor Family AT2G19380 40.000 8.45e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1723 K12741 - gmx:100776220 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1723 3 52281309 52282619 Ssu3g1723 3 52281309 52282619 ECH