Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1717 ATGAGTTGTTGCTTTCATCTTTTCAGAAAAAAGGGATCTTCCTCAGTCAGACGATTGACCGGAGTTGATATAGATGTTTCAAAAATTCAGAATATCAACATTTACACTTACAAGGAAATGCGAATTGCCACTGAAGGTTTTAGTCCTGCAAACAAGATAGGGCAGGGAGGTTTTGGAGCAGTCTATAAGGGAATACTGAGAAACGGTTCTCTGGTAGCTATAAAGGTTTTATCAGCTGAATCGAAACAAGGGGTCCGGGAGTTTTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGGATGGATGCTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTTGAGAATAACAGCCTTGCACAAACACTTATTGGTGCAGGCCATAGTAGCATCCAATTTAGTTGGCATGTAAGGAGGAACATTTGCATAGGTGTTGCCCGGGGCCTTGCATTCCTTCATGAGGAGGTTCGGCCACACATTATCCACAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGACCTCCAGcccaaaatttcagattttggcCTTGCAAAGCTTATTCCACCAAACCTGACCCATATTAGTACCCGTGTAGCTGGAACAGCTGGTTATCTAGCACCTGAATATGCAATCCGAAATCAAGTGACTAGAAAGTCAGATGTCTATAGTTTTGGAGTTCTACTATTAGAAATTGTTAGTGGGAGGCCTAACACAAACAGACGTTTACCTGTTGAAGAACATTATCTTCTCACAAGGGCTTGGGATTTGTATGAGAGTGGGGAGACAGAAAAATTGGTGGATGCTTTTCTAGGTGGAGACTTCAATATTGAGGAGGCAGTCAGATTTTGTAAGATTGGTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGGCCTTCTATGTCCACTGTGCTTGACATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACAAAACCAGgcttgatttttgaatttgtggAAGCCAAAAATTGCGGGAAACAAAAAGGCAAGGCTGAAGTGGATGGTACATCTTTGTTGGCTGAAGGGAAGCAAGACGAGTCATCTTCATCAGGAACCAAGAGCTCTTATGCTACCATGACCTTCACAGCAATTTATGATCGAGGCAATTAG 1170 0.4094 MSCCFHLFRKKGSSSVRRLTGVDIDVSKIQNINIYTYKEMRIATEGFSPANKIGQGGFGAVYKGILRNGSLVAIKVLSAESKQGVREFLTEIKVISSIEHENLVKLDGCCVEDNHRILVYGYLENNSLAQTLIGAGHSSIQFSWHVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTAGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEEHYLLTRAWDLYESGETEKLVDAFLGGDFNIEEAVRFCKIGLLCTQDSPQLRPSMSTVLDMLLGEKDVNEENVTKPGLIFEFVEAKNCGKQKGKAEVDGTSLLAEGKQDESSSSGTKSSYATMTFTAIYDRGN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1717 389 SMART serkin_6 47 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1717 389 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Ssu3g1717 389 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Ssu3g1717 389 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1717 389 CDD STKc_IRAK 53 318 - -
Ssu3g1717 389 PANTHER RECEPTOR-LIKE KINASE 1 375 - -
Ssu3g1717 389 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
Ssu3g1717 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Ssu3g1717 389 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1717 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Ssu3g1717 389 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1717 Ssu-Chr3 52192309 52195412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1717 35 324 Receptor kinase-like Gene Family AT1G53430 57.586 5.76e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1717 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1717 - - gmx:100797257 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1717 3 52192309 52195412 Ssu3g1717 3 52192309 52195412 ECH