Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1715 atgtcacattcCGGGAAACCCGTGTCCGAGTTAGGGCTGAGCGACCGGTTCCGCGACTCACTGAGTTGCTCCGACGACGCGAACAAACCCGATTTCCGTGAACTCGATTTGGGTTCGCCCGTTTCCACATTGCGGCCTCGTAACCACAGTGCTCCCACTAGTAGCAGCAGCAGTAGCAGCGGCTCGACCGGGTCGGGTTCGGGTCGAAACGCGACCAACCCGGTTTCGAAGAGATCCGATTCCGGCGAGTTATCTGGTTCCAGCGAGACTAACAGTCCGACCCGGGGGTCCAAACCGGATCACCGGAGATCCAATTCGGGTCAGAGCCAGAGATCCCCGCCGtcttcctcctcctccgccgccgtGAATTCGCCGCCGCCGAACGTTCTCCCGGCCGGGAACATTTGCCCGTCCGGGAGGGTTCTCAAGGCGGCGGCGGCGCCGAGCCGGAGCCCCAGGAGTGATGTGTTGGGCTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGGGGCGGGAAAGGCGGTGGCGGTGGCGATGCGGCGAGTGCGAGGATCACCGGCGATTTGGGGAGGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTATAAGAGAGGGCGCTTTGCTGAAGCGCTGTGTCTGTATGATCGGGCAATCGCGATTTCTCCGGGCAATGCCGCTTACAGGAGCAACCGTGCCGCGGCGCTGACCGGTTTGGGGCGGTTGCCCGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGAAGGGCGCATCAGCGTTTGGGAATGCTGTTTCTCAGGTTAGGACAGGTGGAGGATGCTAGGAAGCACCTTTGTTATCCTGGGCTGCAGCCGGATCCTTCTGAGTTGCAGAAGTTGCAAATAGTGGAAAAACATATTAGCAAGTGCGTGGATGTACGAAGGATACGAGATTGGAAAAGCATTCTGAGGGAAGTTGATGCTGCTGTTGCTGCTGGGGCAGACTGTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGATGGATGATGCTGAATCAAGCTTATCACGTATTCCCAAATGTGAGCCGCGTCCTGGTTCCTTGTCACAGGCAAGGTTTTTTGGGATGTTTTCTGAGGCTTATTGCTACTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCTAGAGCTCGACTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCTTGCTCGGCTTATGGGGAAGGTTTGAGGCTCGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGATTGCAATCAAGCTTTATGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATGGCAAGTTAGAAAGGTGGGGAGAAGCAGTAAAAGATTATGAGCTTTTGCGGAGAGAGCTACCAGATGACAATGAAGTTGCCGAAAATCTGTTTCATGCACAAGTAGCGTTAAAGAAATCTCGTGGGGAAGAAGTACATAATTTAAAGTTCGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTCGTGCATTTTGAAAGTGCATCCAACTTGCAATGTAAGCAAATATTGCCATTCGTGGATACACTATGTAGTCGCTATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGCAAGCCCCGCAGTCGCCGCTGCTGAGAATGTTAGGATCGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2007 0.5087 MSHSGKPVSELGLSDRFRDSLSCSDDANKPDFRELDLGSPVSTLRPRNHSAPTSSSSSSSGSTGSGSGRNATNPVSKRSDSGELSGSSETNSPTRGSKPDHRRSNSGQSQRSPPSSSSSAAVNSPPPNVLPAGNICPSGRVLKAAAAPSRSPRSDVLGSGTGNYGHGSIMRGGKGGGGGDAASARITGDLGRRVDPEEVKRMGNEEYKRGRFAEALCLYDRAIAISPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLGMLFLRLGQVEDARKHLCYPGLQPDPSELQKLQIVEKHISKCVDVRRIRDWKSILREVDAAVAAGADCCVQLFMCRAEALLKLHQMDDAESSLSRIPKCEPRPGSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALCIQPNYTKAILRRAASNGKLERWGEAVKDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFESASNLQCKQILPFVDTLCSRYPSINFLKVDIQASPAVAAAENVRIVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1715 668 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 10 666 IPR044534 -
Ssu3g1715 668 SUPERFAMILY TPR-like 196 423 IPR011990 GO:0005515
Ssu3g1715 668 MobiDBLite consensus disorder prediction 1 193 - -
Ssu3g1715 668 ProSiteProfiles TPR repeat profile. 388 421 IPR019734 GO:0005515
Ssu3g1715 668 Pfam Tetratricopeptide repeat 202 262 - -
Ssu3g1715 668 CDD TRX_family 573 654 - -
Ssu3g1715 668 MobiDBLite consensus disorder prediction 19 33 - -
Ssu3g1715 668 Pfam Tetratricopeptide repeat 390 421 IPR019734 GO:0005515
Ssu3g1715 668 SUPERFAMILY Thioredoxin-like 471 666 IPR036249 -
Ssu3g1715 668 MobiDBLite consensus disorder prediction 43 94 - -
Ssu3g1715 668 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 10 666 - -
Ssu3g1715 668 SMART tpr_5 434 467 IPR019734 GO:0005515
Ssu3g1715 668 SMART tpr_5 468 501 IPR019734 GO:0005515
Ssu3g1715 668 SMART tpr_5 196 229 IPR019734 GO:0005515
Ssu3g1715 668 SMART tpr_5 230 263 IPR019734 GO:0005515
Ssu3g1715 668 SMART tpr_5 340 373 IPR019734 GO:0005515
Ssu3g1715 668 SMART tpr_5 388 421 IPR019734 GO:0005515
Ssu3g1715 668 SMART tpr_5 502 535 IPR019734 GO:0005515
Ssu3g1715 668 MobiDBLite consensus disorder prediction 106 125 - -
Ssu3g1715 668 Gene3D Glutaredoxin 561 667 - -
Ssu3g1715 668 ProSiteProfiles TPR repeat profile. 196 229 IPR019734 GO:0005515
Ssu3g1715 668 Pfam Thioredoxin 574 660 IPR013766 -
Ssu3g1715 668 Gene3D Tetratricopeptide repeat domain 194 554 IPR011990 GO:0005515
Ssu3g1715 668 Pfam Tetratricopeptide repeat 470 501 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1715 Ssu-Chr3 52037321 52040339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1715 433 578 U-box Gene Family AT3G07370 28.962 1.06e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1715 - - gmx:100805790 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1715 3 52037321 52040339 Ssu3g1715 3 52037321 52040339 ECH