Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1712 ATGGATCCTATTACAACACATGAACATTATCTTCCCCCTCCTTTCCACACAACAAGAGATCTCCACCTGCACCACCAACACCAGTTCCACGCCTTACAACAAAGCACAGAAGACGAGCAAAGCGAAAGCAGCGGGGGCCTGAATCTCGCTCAAAAAAGGGATCGCgaagaaaacaacaacaacaacaacaacaatagtgaAGTCAAGGAAGGAGCTGTGTTTGGTGAAACCAAGATTACAAGAAGACCTCACGAAAGACCTTCTGAATCCAAGAATAAGCCCAAACCCCCCATCATCATCACGCACGACAGCGCCAATGTGCTTAAAACGCATGTCATAAAGGTCGCCGACAGCTGCGACATCATCGATAGTGTCTCCAGCTTCACACGCCGCCGCCAAAGAGGGGTTTGCATCATGAGTGGCACTGGAACCATCACCAAGACCTCGGGCATTGTGGTCACTCTGCATGGAAGGTTCGAGATTTTGTCCCTCACCGGATCCTTTATGCCGCCACGAGCAGCCTCTGGTTTGACCATATATCTGGCTGGTGGATAA 555 0.4757 MDPITTHEHYLPPPFHTTRDLHLHHQHQFHALQQSTEDEQSESSGGLNLAQKRDREENNNNNNNNSEVKEGAVFGETKITRRPHERPSESKNKPKPPIIITHDSANVLKTHVIKVADSCDIIDSVSSFTRRRQRGVCIMSGTGTITKTSGIVVTLHGRFEILSLTGSFMPPRAASGLTIYLAGG 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1712 184 PIRSF ESCAROLA 17 184 IPR014476 GO:0003680
Ssu3g1712 184 MobiDBLite consensus disorder prediction 29 48 - -
Ssu3g1712 184 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 183 - -
Ssu3g1712 184 Gene3D - 108 184 - -
Ssu3g1712 184 ProSiteProfiles PPC domain profile profile. 105 184 IPR005175 -
Ssu3g1712 184 MobiDBLite consensus disorder prediction 74 92 - -
Ssu3g1712 184 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 183 IPR005175 -
Ssu3g1712 184 MobiDBLite consensus disorder prediction 29 99 - -
Ssu3g1712 184 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 184 - -
Ssu3g1712 184 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 184 IPR014476 GO:0003680
Ssu3g1712 184 CDD DUF296 109 184 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1712 Ssu-Chr3 51910739 51911293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1712 1 182 AT-hook Motif Nuclear Localized (AHL) Family AT4G12050 44.156 6.20e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1712 - - gmx:100781436 231.876