Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1702 ATGGGCAATAGCTTAGGATCCATttcatgtttaaaaaacattgccTGTCCTAaagTATCATACTCTCTTCATATAAATTGTGGTGGAAAGCAAATAATAGTGAATGGAAATGAAACATATGATGATGATGCAAATATAGCAGGACCAGCTAGATTCCACCTTGGTGGAACAAACTGGGGATTTAGCAGCATTGGTCATTTCATGGATAATGACCATGTAGAATATTCTATATGGCTAAATCAATCTAAGCTTTCCTTGGCTGTTGCTAAATTATACATCGATGCACATGTTTCTCCCATTTCTCTTACTTATTATGGATTTTGCCTAGGAAATGGAAACTACACGGTGAATCTACACTTTGTAGAGGTCATGTTTACTGATGATCAAACATACAATAGCCTAGGAAGGCACATATTTGATGTCTACATTCAGCACTTTGATGTTACCATGCAAAATAAGCTCTTGTACAATAATGTCTTCTATAGCAATCAAGCAAACTTCATCCCTCCCTCAGAAAATGGTAGTAGCATGTCTGCAAGGACTGTGGTTGCAATTGTGGCTGGTGTAGTAGGTTTTTTTGTCCTAGTATATGGTATACTTTGGTGGAGAGGCTCTCTAGGACAGAAAAGTTCTTTAGCAAAAGGGTCACTGCAAATGGGTTTATTTACCTTACGACAAATCAAAGCAGCAACAAAAAACTTCAATAAAGCCAACAAAATTGGAGGAGGGTTTGGTCCTGTGTACAAGGGAAATTTATTAGATGTGACAATAATAGCAGTCAAACAGCTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGTTAGGCATGATTTCAGCTTTGCAATACCCTTGCCTTGTTAAACTCTATGGCTGTTGTGTCGAAGGAGATCAGTTATTGTTGGTATATGAATATATGGAAAACAATAGCCTTGTTTGTGCTTTGTTTGGTCCAGAAGAGCACCAATTAAAATTGGACTGGTCAACAATGCAAAAGATTTATGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAGGAATTGAGATTGAAAATTGTTCATAGGGACATCAAAGCCACTAATGTGTTGCTTGATAAAAATCTCAACCCAAAAATATCTAACTTTGGTTTAGCCAAGCTCGATGAAGAGGACAATACCCACATAAGCACCCGAATTGCTGGCACTTATGGATACATGGCTCCCGAATATGCTATGCATGGTTATTTGATTGACAAAGCAGATGTCTATAGCTTTGGAGTTGTTGCCTTGGAAATTGTAAGTGGGAGGTGCAATATGATTCCACAGCATAAAAAAGAAGCACTCCCATCTTCTTGA 1344 0.3735 MGNSLGSISCLKNIACPKVSYSLHINCGGKQIIVNGNETYDDDANIAGPARFHLGGTNWGFSSIGHFMDNDHVEYSIWLNQSKLSLAVAKLYIDAHVSPISLTYYGFCLGNGNYTVNLHFVEVMFTDDQTYNSLGRHIFDVYIQHFDVTMQNKLLYNNVFYSNQANFIPPSENGSSMSARTVVAIVAGVVGFFVLVYGILWWRGSLGQKSSLAKGSLQMGLFTLRQIKAATKNFNKANKIGGGFGPVYKGNLLDVTIIAVKQLSSKSRQGNREFLNELGMISALQYPCLVKLYGCCVEGDQLLLVYEYMENNSLVCALFGPEEHQLKLDWSTMQKIYVGIARGLAYLHEELRLKIVHRDIKATNVLLDKNLNPKISNFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLIDKADVYSFGVVALEIVSGRCNMIPQHKKEALPSS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1702 447 SMART serkin_6 234 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1702 447 Pfam Protein tyrosine and serine/threonine kinase 239 433 IPR001245 GO:0004672|GO:0006468
Ssu3g1702 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Ssu3g1702 447 Pfam Malectin domain 22 145 IPR021720 -
Ssu3g1702 447 SUPERFAMILY Protein kinase-like (PK-like) 215 436 IPR011009 -
Ssu3g1702 447 Gene3D Phosphorylase Kinase; domain 1 204 308 - -
Ssu3g1702 447 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 163 - -
Ssu3g1702 447 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 211 435 - -
Ssu3g1702 447 ProSiteProfiles Protein kinase domain profile. 234 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1702 447 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 163 - -
Ssu3g1702 447 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 211 435 - -
Ssu3g1702 447 Gene3D - 19 165 - -
Ssu3g1702 447 Gene3D Transferase(Phosphotransferase) domain 1 309 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1702 Ssu-Chr3 51535992 51539367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1702 8 440 Receptor kinase-like Gene Family AT1G53420 53.196 8.62e-161 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1702 PK_Tyr_Ser-Thr 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1702 - - gmx:732563 568.54