Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1687 ATGAAGAGGCTCAGCTTGTTCATACTTTGCTTATCTGCCTTGTTATATGCTGTTAATGCATTGAACACTGATGGGGAAACTCTGCTGTCACTTCAGAGGCATTGGACATTTGTGCCACCTCCCATAAACTCGAGTTGGAATGCTTCTGATTCCACTCCATGTTCTTGGTTGGGAGTCCAGTGTGACAATAACCATAATGCAATCTTTCTTAATCTCACTGCATACTCAATTTCAGGTCTAGTAGGACCTGAAATAGCACACTTGAGTCACTTGCAAACACTTGACTTGACTTTAAACAACTTCTCAGGGAAAATACCTCCTGAGTTAGGAAATTGTAGTCTGCTTGAGAACCTGAGCCTTTCTGATAACAGTATCAGTGGACAAATACCAGATAGTTTGAGAAACTTGCAGAATTTAGTGTCTTTTAACGTTATGGACAATATGCTAACTGGTCAAATTCCTGAGTTCTTGTTTCAACTTCAACACTTGGAAGATCTTCTCCTGAACCAAAACTATTTGACTGGCCCCATTCCAATGAATGTTGGGAATAGTACAGAAATTTTGAGGCTGTATCTGGGTAATAATCAGTTGTCAGGAAGGATTCCCCCATCCATTGGAAACTGCAGTAAATTAATAGAATTGTTTTTGGACTATAATCAGTTGCATGGGGTTCTACCTGAAAGTCTTAACAATCTCCAAAGTGTCGTTAATTTAGGTGTCAGCAATAATAGACTTGAGGGTACAATTCCTTTATTGGGTTCTGGCAGATGCAAAAGTTTATACTATTTGGACctatcattcaataaatttagtGGGGGCATACCTTCAACCTTCGGAAATTGTAGCGGATTAACAGAATTTTATGCTCTTAACACAAATTTAGGAGGCAGCATCCCATCATCCTTGGGCCAAATAAGTGAACTTTTTATTCTTCGCCTTGAATTCAATCATTTGTCTGGACAAATGCCTTCAGAAATTGGTAATTGTAGGTCTTTAAAAGTGTTGATGTTAAATAACAATGAACTTGAGGGGGAGATTCCAGGTGAATTAGGAATGCTAAGTCAATTGCAAGATCTTAGACTGCATTTCAACAATTTGACAGGTGGAATTCCAGTGAGCATTTGGAAAATTCCTAGCCTTGAGTACTTGCATGTGTATTACAATAACCTTTCTGGGGAACTACCTTTGGAATTGACAGAACTCAAACAACTGAAAAATATCACATTGTATAACAACCAATTCTCTGGAGTCATTCCTCAAAACTTAGGAATCAATAGCAGTTTAGTGGAGTTGGATGTCTCATACAATTACTTCACTAGCAACATCCCACCTAATATTTGCTTTGGACAGCAATTAAAAAGGCTAGTCCTGGCTTCAAATCAATTTCAAGGTGGTATACCTGTTGACATAGGAAGTTGTATAAGTCTTACTAGATTACGTCTTGATGGAAATAACTTAACAGGAACTCTACCTGATTTTAACAGCAATAGTAGTCTCACCTACATGGACATCAGTGAGAACAATATCAGTGGAGCAATTCCATCAAGTTTGGAAAACTGCACAAATCTTACTGATGTTAATTTGTCCCACAACAATTTTTCGGGGCATATACCCTTTGAGCTAGGAAGCCTTGTGAATCTTCAGAGGCTGAACCTTTCTCACAACAGGTTGGAAGGTCCTTTGCCACCTGAGCTGTCAAATTGCAACAAAATGGAATACTTTGATGCAGGATTCAATTCTCTAAATGGTTCATTTCCATCAAGTTTGAGAACTTGGATAGGGTTAACCACATTAACTTTAAGAGAAAATCATTTCACTGGTGGTATCCCAACTGTCTTATCAGAATTTAAACACCTCTATGGTCTACATCTTGGGGGAAATTTTTTTGGAGGCCAAATTCCTAGATCAATTGGTGAGCTGCAGAATCTTCTTTATGAGTTGAATCTAAGTGCTAATGAGTTGACAGGTGATATTCCTCCAGAGATTGGGAAACTGAAACTGCTGCAAAGATTGGATATTTCTCTTAACAATCTTACTGGAAACATTAAAGTTCTTGAAGGTCTCTCTTCATTGGTTGCACTCaatatttcatacaattccTTTTCTGGTCCTCCTCCAGACACACTAGTGAACTTGCTCCATTCTTCTCCATCATCATTCTTGGGCAATCCCGGCATGTGTGTCAGATGTTTTCCATTATATAGGCTGAATTGTTCCAAAAGTAACAGCTTGAAGCCATGTGATGAGAACAATTCCACAAATCCAAAAGGGCTGAGTAAAATTAAAGTTGGGATGATAGCACTTGGATCCACACTATTTGTAATATTTCTGTTACTTGGTCTTGTTTATGTGCTACACTATAAGCAAGATGTCAAGATTTTCCCCAAACAGCGATCATCTTCCTTCCTCAAAaaggtgatgaaggttacagaGAACCTAAATGATAGGTATATTATTGGCAGAGGAGCCCATGGAGTTATTTATAAAGTTGAATTCAGTCCAGACCAAGTTTTTGCTATAAAGAAAATTCCCTTCGCAGATAACAAAGGTCAGATCACAAGCATGAGCAGAGAGATTGAAACCACTGGGAAGATTAGGCATCGAAATCTGGTAAGAATAAAAAACTTCTGGTTAAGAAAGGACTGTGGTCTAATTCTGTATAAGTACATGGATAATGGAAGTCTTCATGATGCTCTGCATGAGAAGTTTCCACCACCATCTTTAGAGTGGAGTGTGCGCTATAGGATTGCTGTTGGAGTTGCACATGGACTTGAATATCTCCATCATGATTGTGATCCTGTCATAGTGCACAGAGACATCAAACCAAAGAATATACTTTTGGATTCTGATATGGAGCCCCATATTACTGATTTTGGCATTGCCACGCTTCTAGACCATTCCTCTACTTCATTGCAATCTCTCTCTATTCCTGGTACAGTTGGGTATATTGCACCAGAGAATGCTTATTCAACAGTGTTGAGTAGGAAGTCTGACGTGTATAGTTATGGAGTGGTTTTGTTTGagccatggttctaa 3036 0.3788 MKRLSLFILCLSALLYAVNALNTDGETLLSLQRHWTFVPPPINSSWNASDSTPCSWLGVQCDNNHNAIFLNLTAYSISGLVGPEIAHLSHLQTLDLTLNNFSGKIPPELGNCSLLENLSLSDNSISGQIPDSLRNLQNLVSFNVMDNMLTGQIPEFLFQLQHLEDLLLNQNYLTGPIPMNVGNSTEILRLYLGNNQLSGRIPPSIGNCSKLIELFLDYNQLHGVLPESLNNLQSVVNLGVSNNRLEGTIPLLGSGRCKSLYYLDLSFNKFSGGIPSTFGNCSGLTEFYALNTNLGGSIPSSLGQISELFILRLEFNHLSGQMPSEIGNCRSLKVLMLNNNELEGEIPGELGMLSQLQDLRLHFNNLTGGIPVSIWKIPSLEYLHVYYNNLSGELPLELTELKQLKNITLYNNQFSGVIPQNLGINSSLVELDVSYNYFTSNIPPNICFGQQLKRLVLASNQFQGGIPVDIGSCISLTRLRLDGNNLTGTLPDFNSNSSLTYMDISENNISGAIPSSLENCTNLTDVNLSHNNFSGHIPFELGSLVNLQRLNLSHNRLEGPLPPELSNCNKMEYFDAGFNSLNGSFPSSLRTWIGLTTLTLRENHFTGGIPTVLSEFKHLYGLHLGGNFFGGQIPRSIGELQNLLYELNLSANELTGDIPPEIGKLKLLQRLDISLNNLTGNIKVLEGLSSLVALNISYNSFSGPPPDTLVNLLHSSPSSFLGNPGMCVRCFPLYRLNCSKSNSLKPCDENNSTNPKGLSKIKVGMIALGSTLFVIFLLLGLVYVLHYKQDVKIFPKQRSSSFLKKVMKVTENLNDRYIIGRGAHGVIYKVEFSPDQVFAIKKIPFADNKGQITSMSREIETTGKIRHRNLVRIKNFWLRKDCGLILYKYMDNGSLHDALHEKFPPPSLEWSVRYRIAVGVAHGLEYLHHDCDPVIVHRDIKPKNILLDSDMEPHITDFGIATLLDHSSTSLQSLSIPGTVGYIAPENAYSTVLSRKSDVYSYGVVLFEPWF 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1687 1011 Gene3D Ribonuclease Inhibitor 254 425 IPR032675 -
Ssu3g1687 1011 Gene3D Ribonuclease Inhibitor 182 253 IPR032675 -
Ssu3g1687 1011 Gene3D Ribonuclease Inhibitor 426 495 IPR032675 -
Ssu3g1687 1011 Gene3D Phosphorylase Kinase; domain 1 783 889 - -
Ssu3g1687 1011 Gene3D Ribonuclease Inhibitor 21 181 IPR032675 -
Ssu3g1687 1011 Pfam Leucine rich repeat 475 533 IPR001611 GO:0005515
Ssu3g1687 1011 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 1008 - -
Ssu3g1687 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Ssu3g1687 1011 Gene3D Ribonuclease Inhibitor 496 746 IPR032675 -
Ssu3g1687 1011 SMART serkin_6 813 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1687 1011 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Ssu3g1687 1011 Gene3D Transferase(Phosphotransferase) domain 1 890 1010 - -
Ssu3g1687 1011 Pfam Protein kinase domain 818 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1687 1011 SUPERFAMILY Protein kinase-like (PK-like) 797 1008 IPR011009 -
Ssu3g1687 1011 Pfam Leucine Rich repeat 87 103 IPR001611 GO:0005515
Ssu3g1687 1011 SUPERFAMILY L domain-like 45 250 - -
Ssu3g1687 1011 SUPERFAMILY RNI-like 189 602 - -
Ssu3g1687 1011 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 1008 - -
Ssu3g1687 1011 Pfam Leucine Rich Repeat 546 568 IPR001611 GO:0005515
Ssu3g1687 1011 ProSitePatterns Protein kinases ATP-binding region signature. 819 842 IPR017441 GO:0005524
Ssu3g1687 1011 ProSiteProfiles Protein kinase domain profile. 813 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1687 1011 SMART LRR_typ_2 401 425 IPR003591 -
Ssu3g1687 1011 SMART LRR_typ_2 544 568 IPR003591 -
Ssu3g1687 1011 SMART LRR_typ_2 640 665 IPR003591 -
Ssu3g1687 1011 SMART LRR_typ_2 426 449 IPR003591 -
Ssu3g1687 1011 SMART LRR_typ_2 208 231 IPR003591 -
Ssu3g1687 1011 SMART LRR_typ_2 688 711 IPR003591 -
Ssu3g1687 1011 SMART LRR_typ_2 353 377 IPR003591 -
Ssu3g1687 1011 SMART LRR_typ_2 88 112 IPR003591 -
Ssu3g1687 1011 SUPERFAMILY L domain-like 565 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1687 Ssu-Chr3 50206164 50209311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1687 12 1008 Receptor kinase-like Gene Family AT1G73080 50.844 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g1687 Pkinase 8.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1687 - - vun:114170650 1613.59