Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1685 ATGGAGATCCACCAAACAAAACTCAAGGTTGGGCTTTGGGAGCACCAGACCGAGACATGCATGGAGAAGTGGGGCGCCAACTCTATCTTATGGGCTCTCAATGGTAGCGTAAATGGAAACGCGAAGGAGAGAAGGAATGGAAATGAGGCTATGGTGGTGATGGCTTTGGGGTCAGATGTAATCAGCATTAGAACATCGAACAAGAGAGACCCCGAGGCCCGAGCAGGTAAACACGAACAGCATGAAGAGCTGATAGAAAGAAAGCTATCGTTCGTCTGTGCTACCAGAGgCAGAATCTTTGGATCATGGTTACATAGTTCTCTCAATAACCCTGCGTATCACATACTGAATTTCCGTACTGTGTACCACATTCCAGCTGTTCAACGCATTTCAGAATGCTTCATAAAGCCACAGCGCCCCATCGAAGACTCAAACCAAATCTACCATTTAACACCTTGGGATATTACCATGCTGTCCATGCACTATATCCAAAAGGGCCTCCTCTTCAAGAAGCCCTCAGTAGCCACTAATCAACAAGATTTCATCCAAAACTTGTTGGAAAAGATGAAGCACTCCCTTTCTCTTGCACTTAACCATTTCTATCCATTAGCTGGTCGCCTTGTCACCCACAAAACCCAAGACCCCCCCTCTTATGTCGTTTTCATTGATTGCAAAAACAGTTGTGGAGCTAGTTTTATCTATTCAACATTGGATATGACCATATGTGACATCCTCTCCCCTATTGATGTCCCACCTATTGTTCACTCATTATTCGACCACGACAGAGATGTAGTGAACCATGACGGTCACACTGTGCCATTGTTGGCCATCCAAGTCACTGAACTAGTGGATGGTGTTTTCACAGGTTGTTCGATGAACCACAGCATTGCTGATGGCACTTCTTTTTGGAATTTCTTCAACACTTGGTCTGAGATATTTCAATTTCTAGCACAAGGGCATCATGAACATGTTGTTGATGTCCCCATTTCGCGCCAACCCATTCACGATCGTTGGTTTCCAGAGGGTTGTAGTCCTCTAATCAATCTCCCCTTCAAACATCATGGCGAGTTTATTAGTAGATTTGAATCACCTAAGCTGAGAGCGAGAATCTTCCACTTCACAGCAGAGTCTATTgccaaattaaaaacaaaggccAACATGGAGTCAAGTACCACCAAAATTTCTTCATTCCAATCCTTGGCCGCACATGTTTGGAGATGCATAACTCGTGCAGGCCGAGTACCACACAGTGAGCGAACCACCTGCTTGTTAGTTGCAAACAACAGAACAAGAATGGAACCGCCGCTGCCTCAGGAGTATTTTGGAAATTGCACTCACGGGTTGAGAGGAGGAGCAACAGCAGGAGAATTGGATCAACATGATCTAGGATGGGCAGCATGGAAATTGCACATGACTGTTGCAAACCATAACGACAAAGCAGTTAAACAAGCAGTTAAAGAGTGGTTACAGTCTCCTGTTGTGTATCAAACACATGAGCGCTATGACCAGTACACTTTGTTATTTACTAGTTCACCAAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCGGTGGCAGTTCTAAGTGGCTTTGCCCTCAAATTTGATGGGAAAGTTACTTCTTATCAAGGATATGAAGGAGGGGGAAGCATAGATTTGGATGTGTGTCTTTTACCTGAAACCATGCATATGCTTGAATCAGACAAGGAGTTCATGAGTACAATTTCTTCGTCCAAGTCAAGGAGTTCGTGA 1758 0.4391 MEIHQTKLKVGLWEHQTETCMEKWGANSILWALNGSVNGNAKERRNGNEAMVVMALGSDVISIRTSNKRDPEARAGKHEQHEELIERKLSFVCATRGRIFGSWLHSSLNNPAYHILNFRTVYHIPAVQRISECFIKPQRPIEDSNQIYHLTPWDITMLSMHYIQKGLLFKKPSVATNQQDFIQNLLEKMKHSLSLALNHFYPLAGRLVTHKTQDPPSYVVFIDCKNSCGASFIYSTLDMTICDILSPIDVPPIVHSLFDHDRDVVNHDGHTVPLLAIQVTELVDGVFTGCSMNHSIADGTSFWNFFNTWSEIFQFLAQGHHEHVVDVPISRQPIHDRWFPEGCSPLINLPFKHHGEFISRFESPKLRARIFHFTAESIAKLKTKANMESSTTKISSFQSLAAHVWRCITRAGRVPHSERTTCLLVANNRTRMEPPLPQEYFGNCTHGLRGGATAGELDQHDLGWAAWKLHMTVANHNDKAVKQAVKEWLQSPVVYQTHERYDQYTLLFTSSPRFNMYGNEFGMGKAVAVLSGFALKFDGKVTSYQGYEGGGSIDLDVCLLPETMHMLESDKEFMSTISSSKSRSS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1685 585 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 125 576 - -
Ssu3g1685 585 Gene3D - 358 569 IPR023213 -
Ssu3g1685 585 Gene3D - 129 347 IPR023213 -
Ssu3g1685 585 Pfam Transferase family 127 574 - -
Ssu3g1685 585 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 125 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1685 Ssu-Chr3 50158603 50164291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1685 169 568 Monolignol Biosynthesis Gene Families AT5G48930 28.333 2.79e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1685 - - gmx:100787276 663.685