Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1669 ATGGCACGGTGCATGTCACATGTTTTGGCTTTTGCAGTTGTTGCTGCATTCTGTGCATTCAGCCGCTTGGTTAACGTTGCACAAGCTCAAACTGCAAACGCCACCACTGATCCTTCTCAAGCAAGAGCTTTAAATTCTGTCTTTCGCAAATGGAGTATATCAGCAGACACAAGTCAATGGAATATTAGCGGTGAACTGTGCAGTGGACGAGCCACTGACAATACCATCATTGATGACAAAACTTTCAACCCATTCATCAAATGTGATTGTTCCTACGACAATAGAACTACTTGCTACATCACAGCACTGAAGGTTTATGCAAAGGACGTGGTTGGTGAAATTCCAGAAGCGCTATGGACTCTCACTTACCTCaccaatttAAATCTTGGCCAAAATTACTTGACGGGTTCTCTACCTCCGGCCATTGGAAATCTAACTCGTATGCAATACTTGACCTTTGGCATCAATAATTTATCTGGGGAGCTTCCGAAGGAATTGGGAAATCTTACAGAGTTAAACTTACTGAGTTTTGGGTCAAACAAGTTCTCAGGATCTCTTCCATCTGAACTTGGGAAATTGACAAAGTTAGAACAACTCTACTTAGATAGTTCGGGAATCAGTGGTCCAATTCCTTCCACATTTGCAAACCTTAGGAATTTGGTGACAGTATGGGCTTCAGACATAGAACTCACAGGCAAAATACCAGACTTTATAGGGAATTGGTCTAAGCTTCAAACCTTGAGGTTTCAGGGCAATTCTTTTAATGGCTCAATACCCTCATCATTTTCCAATTTGACTGCTTTGACAGAATTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTCGTAAGGAATATGAAATCTTTGACTATCTTAGAACTGAGGAATAACAATATTTCTGGTTCAATTCCATCCACCATTGGAgagtttcaaaatttgattcagTTGGATTTAAGCTTCAATAACATCACGGGACAAATTATGGgatcaattttcaatttgagttcGCTCCTTTACTTATTTCTTGGAAATAATAAACTTAGTGGTACCCTCCCGATGCAGAaaagttcatctcttcaaaacATAGACTTGTCATACAATGATCTATCAGGTAGCCTCCCCTCTTGGGTAAATGAACCAAATTTACAACTAAATTTAGTTGCCAACAACTTGACAACAGGGAGTTCAAATACCAGTGGCTTGCCTATTGGGCTTAACTGTCTCCAGAAAAATTTTCCTTGCAATCGAGGTGCTGGAAGATATTTTAACTTTGCAATCAAGTGTGGCGGTCTCCAAATTAAGTCAACAGATGGAATTGTGTATGAAATGGACAATGCGACACTTGGTCCTGCTACATACTTTGTTACTGATACAAATAGATGGGCTGTTAGCAATGTTGGATTGTTTACATGGAGCAATAATCATACATTCACAAGTTTTGTGTCTAATCAGTTCACTGGTACTGTGAACTCGGAGCTCTTCCAAACAGCACGGCTCTCTGCTTCATCATTAAGATATTATGGCTTAGGGCTAGAAAATGGCTTTTACAACATCACCCTTCAATTTGCAGAAACAGCTATTCTAGATACTACCACATGGAAAAGCCTTGGGAGGCGGGTCTTTGATATTTATATTCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAAGGAAGCTGGTGGATTCTCGTACAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGTCAGAAAACTATCTTGAGATCCATCTCTTTTGGGCTGGGAAAGGGACTTGCTGCATACCAACTCAGGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATCCCAGATTTCATACCCACTGTCAGTAACAAACCTCcgagcagtaaaaagaatagaaccGGTCTAATCGTTGGAATTGTTATTGGAGTTGGAGTTGTATgctttctatcaattttttcaattttctgtATCATGCAGAGAAGAAAACaccatgatgatgatgaagAGCTTTTAGGAATTGATACAAAGCCATACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAAATGACTTTAATCTTGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAATTATCTGTGGGATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTGCAACATCGCAATCTGGTCAAATTATATGGATGTTGCATTGAGGGAAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATTGTTTAACCCTCGATTGGTCCACACGCTACAATATTTGCTTCGGTGTTGCTAGAGGTTTAACTTATTTACATGAAGAGTCACGTCTTCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTTTGCTTGATTATGAGCTTATCCCCAAAATATCTGATTTTGGGTTAGCCAAATTGTATGATGATAAAAAGACCCATATAAGCACCCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACATCTTACAGAGAAAGCAGATGTCTTTTCCTTTGGTGTTGTGGCTCTAGAGTTAGTTAGTGGGAGACCGAATTCTGATTCAAGTTTTGAAGGAGAGAAGGTGTATCTTCTAGAATGGGCTTGGCAACTTCATGAAAACAACAGCATAACTGATCTGGTGGATCCTAGACTCTCAGAATTCAACGAAGAAGAAGTAAAACGCATTGTAGGAGTAGCACTTTTGTGCACTCAAACATCACCGGCATTACGGCCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGACCACTATAACTACAAAGCCTGGATACCTGACTGATTGGAAATTTGATGATGTAACCAGCTTGATGACTGACATTGCAATCAAAGGATCGGATACAAGTTACCAGGACTCATCAGCAAGTACTAGCGTAGTGAGTGGTGCAGACTATTCACAAATAAATGTTTCTAAACCGATCCTTAATAAGACTAATAACGAGGGCAGGTAA 3099 0.3859 MARCMSHVLAFAVVAAFCAFSRLVNVAQAQTANATTDPSQARALNSVFRKWSISADTSQWNISGELCSGRATDNTIIDDKTFNPFIKCDCSYDNRTTCYITALKVYAKDVVGEIPEALWTLTYLTNLNLGQNYLTGSLPPAIGNLTRMQYLTFGINNLSGELPKELGNLTELNLLSFGSNKFSGSLPSELGKLTKLEQLYLDSSGISGPIPSTFANLRNLVTVWASDIELTGKIPDFIGNWSKLQTLRFQGNSFNGSIPSSFSNLTALTELRISGLSNGSSSLEFVRNMKSLTILELRNNNISGSIPSTIGEFQNLIQLDLSFNNITGQIMGSIFNLSSLLYLFLGNNKLSGTLPMQKSSSLQNIDLSYNDLSGSLPSWVNEPNLQLNLVANNLTTGSSNTSGLPIGLNCLQKNFPCNRGAGRYFNFAIKCGGLQIKSTDGIVYEMDNATLGPATYFVTDTNRWAVSNVGLFTWSNNHTFTSFVSNQFTGTVNSELFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDTTTWKSLGRRVFDIYIQGTRVLKDFDIQKEAGGFSYRAVQRQFRFEVSENYLEIHLFWAGKGTCCIPTQGTYGPLIQAIHAIPDFIPTVSNKPPSSKKNRTGLIVGIVIGVGVVCFLSIFSIFCIMQRRKHHDDDEELLGIDTKPYTFSYSELKNATNDFNLENKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNCLTLDWSTRYNICFGVARGLTYLHEESRLRIVHRDVKASNILLDYELIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSFEGEKVYLLEWAWQLHENNSITDLVDPRLSEFNEEEVKRIVGVALLCTQTSPALRPSMSRVVAMLSGDIEVTTITTKPGYLTDWKFDDVTSLMTDIAIKGSDTSYQDSSASTSVVSGADYSQINVSKPILNKTNNEGR 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1669 1032 SUPERFAMILY Protein kinase-like (PK-like) 675 984 IPR011009 -
Ssu3g1669 1032 CDD STKc_IRAK 698 959 - -
Ssu3g1669 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Ssu3g1669 1032 Pfam Protein tyrosine and serine/threonine kinase 693 959 IPR001245 GO:0004672|GO:0006468
Ssu3g1669 1032 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 138 1020 - -
Ssu3g1669 1032 Gene3D Ribonuclease Inhibitor 280 386 IPR032675 -
Ssu3g1669 1032 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 138 1020 - -
Ssu3g1669 1032 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Ssu3g1669 1032 Gene3D Transferase(Phosphotransferase) domain 1 768 970 - -
Ssu3g1669 1032 Gene3D Ribonuclease Inhibitor 37 279 IPR032675 -
Ssu3g1669 1032 SMART serkin_6 692 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1669 1032 Gene3D - 424 615 - -
Ssu3g1669 1032 Gene3D Phosphorylase Kinase; domain 1 653 767 - -
Ssu3g1669 1032 SUPERFAMILY L domain-like 95 396 - -
Ssu3g1669 1032 ProSiteProfiles Protein kinase domain profile. 692 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1669 1032 Pfam Malectin domain 427 611 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1669 Ssu-Chr3 48933469 48952936 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1669 109 278 Receptor kinase-like Gene Family AT1G56120 29.825 1.23e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1669 PK_Tyr_Ser-Thr 7.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1669 - - gmx:100798233 1729.92