Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1659 ATGCAAGGGAGTGGTTTGAGTGGGCCAATTCCTCTTGGAATTTCAATTTTGAGAAACCTTACTGACTTGAGGGTTACGGACTTGAATGGATCTGCTTCACCATTCCCACAACTTAATAATATGACAAATTTGGAAACACTAATATTGAGGAGTTGCAACATTATCGGATCCTTGCCAGAGTATCTTGGAAAATTGACTACTTTGCAAGTACTAGACCTTAGCTACAACAAATTAACTGGACCAATTCCGAGCAGTTTTGATGGTCTTCGGAACATGAATATGCTATTTTTAGGTGGGAATCTTCTCACTGGATCGCTGCCTCAGTGGATAGATAAACCTGACTTTGTTGATCTCTCATATAACAACTTCAGTATCAGCAGCTTGGATCAGCTGACTTGTCAACAGGGAAGCGTGAACTTGTTTGCTTCATCTTTGAATGGAAACAGCTTagGAAATGTTTCATGTTTGTCAAGCATTCAGTGTCCTAAAACTTCatattctctctatataaattgtGGTGGAAAGATTGTAACTTCTGGTGGAAATAAGACATATGATGATGACTTGGGTGCGACTGGACCAGCAAGATTTCGTAACCCTGGAACGAATTGGGCACTTATCAACACTGGTCATTTTTTTGATAGCAATCGCGCAGACTACTATACTTGGACTACTAATACAACTAAGCTTGCAGTGGACAATGCTGAACTATACATGGATGCACGTGTTTCTCCAAACTCTTTGACCTATTATGGATTTTGCTTGGGAAATGGAAACTACACAGTAAATCTCCATTTTGCAGAAATAATGTTTACTGATGATAAAACATATAGCAGCCTTGGAAGGCATGTATTTGATATCTACATTCAGAGAAAGTTGGTGGTTAAGGATTTCAATATTGCAAAAGAAGCAGGGGGTGTTGGTAAGgcagttattaaaaatttcacagCTGTTGTGACTAGTAATGCCTTGGAGATCCGATTATATTGGGCTGGGAAAGGAACCACTTCTATTCCATTTGGATCAGTATATGGTCCTCTTATATCGGCTATATCCGTTGATCCTGACTTTATACCCCCATCAGAAAGTGGTAGTAGCATATCCGTAGGGGTTGTGGTTGCAATTGTGGCTGCTGGAGCAATTATTATCATCTTGGTATTTGGTATATTGTGGTGGAAGGGCTTTTTAGGACGGAAAAGATCAGTGACCAGAGAACTAAAGGGTTTAGAATCAGAACCTGGCTTATTTACTTTACGACAAATCAAGGTAGCAACAAATAACTTTGACAAAGCCTTCAAGATTGGGGAAGGAGGGTTTGGTCCTGTTTACAAGGGCATACTGTCAGATGGCACTGTAGTAGCAGTTAAGCAGCTTTCTACTAAGTCAAGGCAAGGGAATCGTGAATTTACAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCTTGTTTAGTTAAGCTCTATGGCTGTTGTATGGAGGAGGATCAACTGTTACTGATATATGAATACATGGAAAACAACAGTCTTGCTCGTGCTTTATTTGCCAAAAGTGATGATCCTGAGAAAGTTCAATTGAGATTGGATTGGCAAACAAGACAGAGGATTTGTGTTGGTATTGCTAAAGGCTTGGCTTACCTTCATGAAGAGTCAAGACTGAAGATTGTTCATAGGGACATCAAGGCCACTAATGTGTTGCTGGATAAAAATCTCAACCCCAAGATATCTGATTTTGGTTTGGCCAAGCTTAATGATGGAGACAAAACCCACTTGAGCACCAGAATAGCTGGCACTTATGGGTACATTGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCGTTGGAAATTGTTAGCGGGATGAGCAACACCATTAGCCAGCCTACGGAAGAATGCTTCTCTCTCCTGGATTGGGTGCATCTCTTAAAGGAAAAAGGTAATCTAATGGAGATTGTGGATAAGAGGTTGGGTGAAGACTTCAACAAAAAGGAGGCAATGGTGATGATTAATGTAGCTCTTTTATGCACCAAAGTCTCTCCAGCACTCAGGCCTACCATGTCTTCAGTGGTAAGCATGCTTGAAGGTAGAACACATGTTCAAGAGGTGATGTCAGACAGAAGAGAGGTATTGGATGATAAGAAATTTGAGATGATGCGACAGTATTACCAACATAGAGgagaaaataacataattgaGTCTCAGAGCCAAAGTGTCCCTACAGAAGAAGCTTCTGTACTTCTATCAGATACGGGTTCTTCTGGTGGGGAAATCAAAAGTTAG 2310 0.3978 MQGSGLSGPIPLGISILRNLTDLRVTDLNGSASPFPQLNNMTNLETLILRSCNIIGSLPEYLGKLTTLQVLDLSYNKLTGPIPSSFDGLRNMNMLFLGGNLLTGSLPQWIDKPDFVDLSYNNFSISSLDQLTCQQGSVNLFASSLNGNSLGNVSCLSSIQCPKTSYSLYINCGGKIVTSGGNKTYDDDLGATGPARFRNPGTNWALINTGHFFDSNRADYYTWTTNTTKLAVDNAELYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRHVFDIYIQRKLVVKDFNIAKEAGGVGKAVIKNFTAVVTSNALEIRLYWAGKGTTSIPFGSVYGPLISAISVDPDFIPPSESGSSISVGVVVAIVAAGAIIIILVFGILWWKGFLGRKRSVTRELKGLESEPGLFTLRQIKVATNNFDKAFKIGEGGFGPVYKGILSDGTVVAVKQLSTKSRQGNREFTNEIGLISALQHPCLVKLYGCCMEEDQLLLIYEYMENNSLARALFAKSDDPEKVQLRLDWQTRQRICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLNDGDKTHLSTRIAGTYGYIAPEYAMHGYLTDKADVYSFGIVALEIVSGMSNTISQPTEECFSLLDWVHLLKEKGNLMEIVDKRLGEDFNKKEAMVMINVALLCTKVSPALRPTMSSVVSMLEGRTHVQEVMSDRREVLDDKKFEMMRQYYQHRGENNIIESQSQSVPTEEASVLLSDTGSSGGEIKS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1659 769 SUPERFAMILY Protein kinase-like (PK-like) 410 711 IPR011009 -
Ssu3g1659 769 Pfam Malectin domain 167 351 IPR021720 -
Ssu3g1659 769 Gene3D - 165 355 - -
Ssu3g1659 769 Gene3D Ribonuclease Inhibitor 1 164 IPR032675 -
Ssu3g1659 769 MobiDBLite consensus disorder prediction 741 769 - -
Ssu3g1659 769 CDD STKc_IRAK 434 705 - -
Ssu3g1659 769 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 146 747 - -
Ssu3g1659 769 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 56 111 - -
Ssu3g1659 769 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 55 - -
Ssu3g1659 769 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 146 747 - -
Ssu3g1659 769 Pfam Protein tyrosine and serine/threonine kinase 433 703 IPR001245 GO:0004672|GO:0006468
Ssu3g1659 769 Gene3D Phosphorylase Kinase; domain 1 397 503 - -
Ssu3g1659 769 ProSiteProfiles Protein kinase domain profile. 428 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1659 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Ssu3g1659 769 SUPERFAMILY L domain-like 2 153 - -
Ssu3g1659 769 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 56 111 - -
Ssu3g1659 769 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 55 - -
Ssu3g1659 769 SMART serkin_6 428 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1659 769 Pfam Leucine rich repeat 42 102 IPR001611 GO:0005515
Ssu3g1659 769 Gene3D Transferase(Phosphotransferase) domain 1 504 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1659 Ssu-Chr3 48446561 48454847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1659 1 737 Receptor kinase-like Gene Family AT1G53420 55.780 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1659 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1659 - - ccaj:109799273 1249.96