Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1658 ATGATGGGTGCCTTCTCTGgatttcctcttctttttcttctccctcCTTGCTTCGCTCTTTTTGCTTTTGGAGCCACTTTGCCAGAAGATGAAGTGCGAGCACTGAGAGACATAGCTAACACAATTGGGAAGAAGAATTGGGACTTCAGCGTAGATCCATGTAGTAGAAAGAGTAATTGGACATCGGCCATTCAATTGCAAGGTTCAGAAAATGCCGTGACCTGTAATTGTTCCTTTGTGAATCACACAGTTTGCCATGTTGTTAGCATCGTTTTAAAAGCACAAAATCTTTCGGGTAGTGTCCCACCGGAGCTTGTCAGGTTGCCTTATCTCCAAGAAATTGACCTCACCCGCAACTTCCTTAATGGTACAATTCCTAAACAATTGGGAACCTTAAACCTTGTCAACATTGTCTTTTATGGAAACCATCTAACTGGTCCTATCCCAAAGGAGCTTGGAAACATCACCACTCTCAAAAGTTTGGTATTGGAGTTCAATCAATTATCTGGAAATCTTCCTCCAGAGCTTGGGAATCTTACCCACATTGAAAGGCTGTTTCTAACCTCCAACAATTTCACTGGAGAGTTACCTGCAACATTGGCTAGGCTCACAACATTAAAGCGTGTTCGTATTGGTGACAATCAATTCTCTGGAGCAATACCCAATTTTATACAGAGCTGGATAAATCTTGAGAAACtCGTGATGCAAGGGAGTGGATTGAGTGGCCCAATTCCTTCTGGAATTTCAATTTTGAGAAACCTTGTTGACTTGAGGGTTACGGACTTGAATGGATCTGATTCACCATTTCCACAACTTAATAGTATGACAAATTTGGAAACATTAATATTGAGGAGTTGCAACATTATCGGATCCTTGCCTGAGTATCTTGGAAAATTGACTACTTTGAAAGTACTAGACCTTAGCTACAACAAATTAAGTGGACCAATTCCAATCAGTTTTGATGGCCTTTGGAACTTGAATATGCTATTTTTAGATGGGAATCTTCTCACTGGATTGCTGCCTCAATGGATAGATAAACCTGACGTTGTTGATCTCTCATATAACAACTTTAGCATTGACAACATACAACAGCTGACTTGTCAACAGGGAAGCGTGAACTTGTTTGCTTCATCTTTGAATGGGAACAGCTTagGAAATGTTTCATGTTTGTCAAACATTAACTGTCCTAAAACTTCGtattctctatatataaattgtggTGGAAAGCTTGTAACCTCTTATGGAAATAAGACATATGATGATGACTCGGGTAAGACCGGACCAGCAAGATTTCGTTACCCTGGAACGAACTGGGCACTTATCACCACTGGTCATTTCTTTGATAGTAATCGCACAAACTACTATACTTGGACTACTAATACAACTAAGCTTGCAGTGGACAATGCTGAACTGTACATGGATGCACGTGTTTCTCCAAATTCTTTGACCTATTACGGATTTTGCTTGGGAAATGGAAACTACAAAGTAAATCTCCATTTTGCAGAAATAATGTTTACCAATGATAAAACATATAGCAGCCTTGGAAGGCGTGTATTTGATATCTACATTCAGAGAAAGTTGGTGGTTAAGGATTTCAATATTGCAAAAGAAGCAGGGGGAGTTGGTAAGGCGGTCATTAAAAATTTCACAGCTGTTGTGGCTAGTAATGCCTTGGAGATCCGATTGCATTGGGCTGGGAAAGGAACCACTTCTATTCCATTTGGATCAGTATATGGTCCGCTTATATCAGCTATATCCGTTGATCCTGACTTTATACCCCCATCAGAAAGTGGTAGTAGCATATCCGTAGGGGTTGTGGTTGCAATTGTGGTTACTGGAGCAATTATTATCATCTTGGTATTTGGTATATTGTGGTGGACGGGCTTTTTAGGACGGAAAAGATCAGTGGCCAGAGAACTAAAGGGTTTAGAATTGCAAACTGGTTTATTTACCCTGCGACAAATCAAGGAAGCAACAAATAACTTTGACAAAGCCTTCAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGtttatgaaaaaaattaaatatgtcctTCAGTTACTTGGATACATTGCTCCTGAGTATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGGATGAACAACACCATTAGCCAGCCTACAGAAGAATGCTTCTCTCTCCTTGattggGTGCAtctcttgaaagaaaaaggtaatCTAATGGAGGTTGTGGATAAGAGGTTGAGTGAAGACTTCGACAAAAAGGAGGCAATGGTGATGATCAAAGTAGCTCTTTTATGCACCAAAGTCTCTCCAGCACTTAGGCCAACCATGTCTTCAGTGGTAAGCATGCTTAAAGGTAGAACACATATCCAAGAGGTGGTGTTAGACACAAAAAAGGCATTGGATAATAAGAAATTTGAGATGATGCGACAATATTACCAACATAGAGgagaaaataacataattgaGTCTCACAGCCAGAGTGTCCCAATAGAAGAAACATCACTCGTATCTGATACGGGTTCTTAG 2562 0.3864 MMGAFSGFPLLFLLPPCFALFAFGATLPEDEVRALRDIANTIGKKNWDFSVDPCSRKSNWTSAIQLQGSENAVTCNCSFVNHTVCHVVSIVLKAQNLSGSVPPELVRLPYLQEIDLTRNFLNGTIPKQLGTLNLVNIVFYGNHLTGPIPKELGNITTLKSLVLEFNQLSGNLPPELGNLTHIERLFLTSNNFTGELPATLARLTTLKRVRIGDNQFSGAIPNFIQSWINLEKLVMQGSGLSGPIPSGISILRNLVDLRVTDLNGSDSPFPQLNSMTNLETLILRSCNIIGSLPEYLGKLTTLKVLDLSYNKLSGPIPISFDGLWNLNMLFLDGNLLTGLLPQWIDKPDVVDLSYNNFSIDNIQQLTCQQGSVNLFASSLNGNSLGNVSCLSNINCPKTSYSLYINCGGKLVTSYGNKTYDDDSGKTGPARFRYPGTNWALITTGHFFDSNRTNYYTWTTNTTKLAVDNAELYMDARVSPNSLTYYGFCLGNGNYKVNLHFAEIMFTNDKTYSSLGRRVFDIYIQRKLVVKDFNIAKEAGGVGKAVIKNFTAVVASNALEIRLHWAGKGTTSIPFGSVYGPLISAISVDPDFIPPSESGSSISVGVVVAIVVTGAIIIILVFGILWWTGFLGRKRSVARELKGLELQTGLFTLRQIKEATNNFDKAFKIGEGGFGPVYKFMKKIKYVLQLLGYIAPEYAMHGYLTDKADVYSFGIVALEIVSGMNNTISQPTEECFSLLDWVHLLKEKGNLMEVVDKRLSEDFDKKEAMVMIKVALLCTKVSPALRPTMSSVVSMLKGRTHIQEVVLDTKKALDNKKFEMMRQYYQHRGENNIIESHSQSVPIEETSLVSDTGS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1658 853 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 74 289 - -
Ssu3g1658 853 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 290 382 - -
Ssu3g1658 853 Pfam Protein tyrosine and serine/threonine kinase 691 795 IPR001245 GO:0004672|GO:0006468
Ssu3g1658 853 Gene3D Ribonuclease Inhibitor 156 225 IPR032675 -
Ssu3g1658 853 Gene3D Ribonuclease Inhibitor 33 155 IPR032675 -
Ssu3g1658 853 Gene3D - 397 589 - -
Ssu3g1658 853 Gene3D Transferase(Phosphotransferase) domain 1 666 820 - -
Ssu3g1658 853 SUPERFAMILY L domain-like 82 357 - -
Ssu3g1658 853 Gene3D Ribonuclease Inhibitor 226 370 IPR032675 -
Ssu3g1658 853 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 690 822 - -
Ssu3g1658 853 Pfam Malectin domain 401 585 IPR021720 -
Ssu3g1658 853 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 290 382 - -
Ssu3g1658 853 MobiDBLite consensus disorder prediction 834 853 - -
Ssu3g1658 853 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 289 - -
Ssu3g1658 853 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 380 678 - -
Ssu3g1658 853 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 690 822 - -
Ssu3g1658 853 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 380 678 - -
Ssu3g1658 853 SUPERFAMILY Protein kinase-like (PK-like) 690 803 IPR011009 -
Ssu3g1658 853 Pfam Leucine rich repeat 276 336 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1658 Ssu-Chr3 48295992 48328065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1658 690 829 Receptor kinase-like Gene Family AT1G53420 48.611 1.29e-37 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1658 Malectin 1.5e-43 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1658 - - ccaj:109799273 1033.09