Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1653 ATGTCCTCTTCCTCCCATGAACTCATCCTCACCAGCTCCCCCGACGGCCCCATCACGGCCTACGACGCCCTCACCGGCACCGCCGTGGCCCGATTCTCCGGCAGCCGGTCCCCGTGCCGCGGTCTGACCACGGCGGGCCGGAGACTGATCGCGGTCTCACACGTGTCTTCAGACACGGGTGCAGGCTCGATTAACATCTACAATTGGTACAGTTCTACTGTTTTCCACAACTTCCCTCTGCCTGAACCTGTTGCTCCACTCATTGGTACCCCTGATGGAGCATTTCTCTTTGCTGGTGGCATATCAGGGAGTGTTTTTTCTCTTTCAGTTTCTTCTGGGGATGTGATCAGATCAATTGCCGCACACTCAAAAGCAGTTTCCAGTCTTCATCTGAGTGAGGATGGGTCACTTGTTATTTCAGGTAGCGATGATGGCACAGTTGTTGTTGTCCCAACCTTTAAGATTGTTGTTGGAGCCTCCTTGGAGGAAGACCTAGAAGACTTGATTTTGCATAAATGGAAGGCACATTCTGATTCAGTGACTGCTTTCAACTCTGGGATGATAGGTACTTTGGTTTCTTGCTCACTGGACTGCACGTGTAAGTTTTGGAATCTGGGAAATAGTGGGGTTCTCATGAGGACTGTGGCATTCCCATGTGCCATTTTCGGGGTTGCCTTGGATTCAACAGGGTCAGGATTCTATGCTCCTGGTGCAGATGGGTTGGTTTATAAGGGGGTAGTGAAGGTTGGGAGCAGAAAATTACTGGGTATGGGCTATGAGGTGAACACTTGGTCTAAGAGCCATGGTGGGTCAATTGTGTCTTTGGTTTTGGTGAATGAAGGGAGGAATTTGGTGTCTGCTGCAGAAGATGGGAGAGTGTGGGTGTGGGATGTTGAGAAAGGTGAAGTCACAATGATTTTGGGGAATGAAATGGTAAGCATTAGTGATATGATTGTGGCCAAGGGTAGTGGTGGTTTTGGAGTTAGAAAAGGAATTGCAGTTGGGGAAGGTAGTGGGTTCTTCTCTTCTCCTGGGTTGTGTGATGACGAGTTGATCAAGACCCTGAAGCAGATCACAGAGCTTGGGGAGGTCAGGGATGTGGTGGTTCAAGACAAGAAAAGGGCCATTGACATGTTAGAGTCTGCAATAGAAATGTATGAGAGGCTTTTGAAGCTCATCCTTAAGGAAGCTACCAAAGCCATTGAAGAGggggaaaaggaagaagatatAGATGAAGAGGAACAAGGTAAAGAGGATGAAAAGGAAGACAATCAATATGTGTTACCGTGA 1290 0.4791 MSSSSHELILTSSPDGPITAYDALTGTAVARFSGSRSPCRGLTTAGRRLIAVSHVSSDTGAGSINIYNWYSSTVFHNFPLPEPVAPLIGTPDGAFLFAGGISGSVFSLSVSSGDVIRSIAAHSKAVSSLHLSEDGSLVISGSDDGTVVVVPTFKIVVGASLEEDLEDLILHKWKAHSDSVTAFNSGMIGTLVSCSLDCTCKFWNLGNSGVLMRTVAFPCAIFGVALDSTGSGFYAPGADGLVYKGVVKVGSRKLLGMGYEVNTWSKSHGGSIVSLVLVNEGRNLVSAAEDGRVWVWDVEKGEVTMILGNEMVSISDMIVAKGSGGFGVRKGIAVGEGSGFFSSPGLCDDELIKTLKQITELGEVRDVVVQDKKRAIDMLESAIEMYERLLKLILKEATKAIEEGEKEEDIDEEEQGKEDEKEDNQYVLP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1653 429 Gene3D - 1 165 IPR015943 GO:0005515
Ssu3g1653 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 149 - -
Ssu3g1653 429 SMART WD40_4 257 297 IPR001680 GO:0005515
Ssu3g1653 429 SMART WD40_4 166 204 IPR001680 GO:0005515
Ssu3g1653 429 SMART WD40_4 112 151 IPR001680 GO:0005515
Ssu3g1653 429 PANTHER OS09G0477800 PROTEIN 1 408 - -
Ssu3g1653 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Ssu3g1653 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 302 - -
Ssu3g1653 429 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
Ssu3g1653 429 SUPERFAMILY WD40 repeat-like 5 318 IPR036322 GO:0005515
Ssu3g1653 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Ssu3g1653 429 Coils Coil 369 414 - -
Ssu3g1653 429 Pfam WD domain, G-beta repeat 170 204 IPR001680 GO:0005515
Ssu3g1653 429 Pfam WD domain, G-beta repeat 115 149 IPR001680 GO:0005515
Ssu3g1653 429 PANTHER WD-REPEAT PROTEIN 18 1 408 IPR045227 -
Ssu3g1653 429 MobiDBLite consensus disorder prediction 405 419 - -
Ssu3g1653 429 Gene3D - 166 321 IPR015943 GO:0005515
Ssu3g1653 429 MobiDBLite consensus disorder prediction 403 429 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1653 99 300 U-box Gene Family AT1G04510 28.922 4.57e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1653 K14829 - gmx:100785191 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1653 3 48118184 48119473 Ssu3g1653 3 48118184 48119473 ECH