Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1651 ATGGCCATTCCTGcttttatgtttcttatttGCAGGCTATTATTACTGTTCTCTCAAACTTGTTATGCAATTGACACCATCACCCAAGTTCAGTCACTTCCTGATGGCAGCACCTTGGTTTCCAAGGACGGAAGCTTTGAGTTGGGTTTCTTCAATCCTGGGAGTTCCTCGAACCGCTATCTCGGAATCTGGTACAGAAGTATCACTGTTAAAACAGTGGTTTGGGTTGCCAACCGTGACAATCCAATCAGAGACAACTCCAGCATGTTGGTCATAAGCCAGGAGGGAAACCTCGTGCTTCTCAGCAAGAACCAGACTCTTCTTTGGACAGCAAATGCAACAACCAAAGCTTCAAGTCCAGTTGTGCAGCTCTTGGACACTGGAAACTTGGTAATTAGAGATGGTAATGAAGAGAGTGTTTTTCTGTGGCAAAGCTTTGACCATCCTTGTGACACACTATTACCGGGAATGAAGCTTGGGTGGGACTTAAAAACTGGTCTTAACCGGCGTCTTACTTCTTGGAAGAACTGGGACGACCCATCTTCGGGGGATTTTACTTACGGAATGGTAATAGGAAACAATCCTGAATTGGTGATGTGGAAGGGCTCCGTTGAGTACTTTAGGACTGGGCCTTGGACAGGGGATCAGTTCAGTGGAGTACTTGTGATCAAGACTAACCCACTTTATGATTACAAATTTGTCAATAACACAGATGAAGTGTATTACCAATACACCCTCAAGAATAGTGCCGTGATTACTGTAATTGTTATGAATCAAACGCTTTATCTTCGTCAACGCCTTACTTGGATTCCTGAAGCCAATACTTGGACTATTTACCAATCCTTGCCACGAGATGGTTGTGATGTTTATAACACTTGTGGGCCCAATGGAAATTGCGTCATTGCTGGGTCACCAATTTGCCAGTGCTTAGACGGGTTCGAGCCAAAATCGCCCCAACTGTGGAATGCAATGGATTGGAGACAAGGGTGCGTGCGCAGTGAAGAGTGGAGTTGTAGGGTCAAAGATAGAGATGGGTTTCGTAGATTTGCCAGTATGAAATTGCCGAATACTACATATTCTTGGATCAATGAAAGTATGACACTTGAGGAGTGCAAGGCCAAATGTTTGGAAAATTGTTCCTGCGCGGCTTATTCGAACTTGGACACGAGTGGAGGAGGTAGTGGGTGTTCTATTTGGGTTGGTGAACTTGTTGATTTGAGAGTTATAGAAAGTGGGCAAGATTTATATGTTCGAATGGCTATTTCAGATACGGGTGGTAAACATGGGCATAATCGGAAAAAAGTAGTCGTGGCGGTTTCAGTCATAGCTTCGTTGGTCCTAGTGATGTTATTAGCATTCTGCATTTacatgaacaaaaaaatatatagagggaAGAAAACAGAGACAAAGATGTCGACAGAGGAGAAAGACAAAGGCGGACAAGAAGATTTGGAGCTTCCTTTCTTTGATCTTGCAACAATAGTTAATGCCACTAATAACTTTTCAATTGAGAATAAGCTTGGTGAAGGTGGTTTTGGGCCTGTATACAAGGGTATATTAGTAGATGGACAAGAAATTGCAATCAAAAGGCTTTCACGAAGTTCAAGACAAGGATTGAAAGAATTTAGGAATGAAGTTATATTGTGTGCCAAACTTCAACACCGAAATCTTGTTAAGGTTTTGGGTTATTGCATTGAAGGAGAGGAGAAAATGTTACTCTATGAATACATGCCCAACAAAAGTCTcgatttatttctttttgATTCGgctcaaagtaaaattttaaattggcCAGTGCGCTTTAACATTTTGAATGCAATTGCTCGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTAAGAATCATACATAGAGATCTGAAAGCAagcaatattttattagacaatgaaatgaatccaaaaatttcagattttggcCTAGCTAGAATGTGTGGAAGTGATCAAGTTGAAGGGAGTACAAGCATCATAGTTGGGACACATGGTTACATGGCACCTGAATATGCCATTGATGGATTATTCTCTATAAAATCGGACGTGTTCAGCTTTGGAGTGCTATTGCTAGAAATTGTTagtggaaagaaaaatagagcatTTACCTACCAAAACCACAATCATAATCTTATCAATCATgCATGGAGATTATGGAAAGAGGGTACTCCAGAGCAATTGATTGATGCTTGTTTGGAAAACTCATGTAATGTATTTGAAGCTGTACGCTGCATTCAAATTAGTCTTCTATGTCTACAACATCATCCAAATGACAGGCCGAACATTACATCAATTGTTGTGATGTTGACCAATGAAAATGCTTTACCTCAACCCAAAGAGCctgatttcataattaaaaaggtCTCAAACGAAGGAGAACAATCTTCTAATAGACAGACATCTTCTACAATCAATGAAGTAACTGTCTCACTTTTAAgtgttagataa 2457 0.3822 MAIPAFMFLICRLLLLFSQTCYAIDTITQVQSLPDGSTLVSKDGSFELGFFNPGSSSNRYLGIWYRSITVKTVVWVANRDNPIRDNSSMLVISQEGNLVLLSKNQTLLWTANATTKASSPVVQLLDTGNLVIRDGNEESVFLWQSFDHPCDTLLPGMKLGWDLKTGLNRRLTSWKNWDDPSSGDFTYGMVIGNNPELVMWKGSVEYFRTGPWTGDQFSGVLVIKTNPLYDYKFVNNTDEVYYQYTLKNSAVITVIVMNQTLYLRQRLTWIPEANTWTIYQSLPRDGCDVYNTCGPNGNCVIAGSPICQCLDGFEPKSPQLWNAMDWRQGCVRSEEWSCRVKDRDGFRRFASMKLPNTTYSWINESMTLEECKAKCLENCSCAAYSNLDTSGGGSGCSIWVGELVDLRVIESGQDLYVRMAISDTGGKHGHNRKKVVVAVSVIASLVLVMLLAFCIYMNKKIYRGKKTETKMSTEEKDKGGQEDLELPFFDLATIVNATNNFSIENKLGEGGFGPVYKGILVDGQEIAIKRLSRSSRQGLKEFRNEVILCAKLQHRNLVKVLGYCIEGEEKMLLYEYMPNKSLDLFLFDSAQSKILNWPVRFNILNAIARGLLYLHQDSRLRIIHRDLKASNILLDNEMNPKISDFGLARMCGSDQVEGSTSIIVGTHGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNRAFTYQNHNHNLINHAWRLWKEGTPEQLIDACLENSCNVFEAVRCIQISLLCLQHHPNDRPNITSIVVMLTNENALPQPKEPDFIIKKVSNEGEQSSNRQTSSTINEVTVSLLSVR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1651 818 Gene3D Phosphorylase Kinase; domain 1 462 576 - -
Ssu3g1651 818 SMART blect_4 30 149 IPR001480 -
Ssu3g1651 818 SUPERFAMILY Protein kinase-like (PK-like) 484 793 IPR011009 -
Ssu3g1651 818 Gene3D Hepatocyte Growth Factor 337 422 - -
Ssu3g1651 818 CDD PAN_AP_plant 337 420 - -
Ssu3g1651 818 Gene3D Transferase(Phosphotransferase) domain 1 577 790 - -
Ssu3g1651 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Ssu3g1651 818 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Ssu3g1651 818 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1651 818 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Ssu3g1651 818 Pfam Domain of unknown function (DUF3403) 773 818 IPR021820 GO:0004674
Ssu3g1651 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Ssu3g1651 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 811 - -
Ssu3g1651 818 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 32 811 - -
Ssu3g1651 818 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Ssu3g1651 818 ProSiteProfiles Protein kinase domain profile. 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1651 818 Pfam Protein tyrosine and serine/threonine kinase 502 771 IPR001245 GO:0004672|GO:0006468
Ssu3g1651 818 CDD STKc_IRAK 507 774 - -
Ssu3g1651 818 Pfam PAN-like domain 338 406 IPR003609 -
Ssu3g1651 818 Gene3D - 20 146 IPR036426 -
Ssu3g1651 818 Pfam S-locus glycoprotein domain 207 317 IPR000858 GO:0048544
Ssu3g1651 818 SMART ntp_6 341 419 IPR003609 -
Ssu3g1651 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 180 IPR036426 -
Ssu3g1651 818 CDD B_lectin 30 149 IPR001480 -
Ssu3g1651 818 Pfam D-mannose binding lectin 72 175 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1651 Ssu-Chr3 48001009 48004747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1651 420 818 Receptor kinase-like Gene Family AT4G23220 47.805 5.06e-127 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1651 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1651 - - gmx:100776310 1408.28