Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1647 ATGCCTGGGAACAAGTATAACGGTAACTCCAACGACATTACGGACCGTGTGGGACGGCTTGTGAGAGACAGAGAATTGAGAAAGAGCGCGAGGGCGAGTCATTTGAACGAGCCGAGTGAGAACAATGGTACTAGGGTTAGTGGCGAAGCTTTTGAGCACGAGCACGTGCGGTTGAGGGAAGAAGAGAACGTGGGCGATGTTGCTGAAGGGGGTGCGGCGACGAAGGGGATTGGGGAGGAAAGGCAAGAGGTGAAACCGTTTAGACAGAGGCTGCTGGTGGTGGCTAATAGGTTGCCAGTGTCGGCAGTCAGGAAAGGCGAGGATGCGTGGTCGTTGGAGATAAGTGCCGGTGGCCTCGTCAGCGCGCTGTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCCGGTGTGAACGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCCTTGGCCGAAAAGAGGTGTATCCCTGTATTTCTTGATGAAGAGATCGTTCATCAATATTACAATGGCTACTGCAACAACATATTATGGCCCCTTTTCCACTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACACGCAGTTTTCAGTCTCAGTTTGAGGCATATGAGAAAGCAAATCAGATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAGTGCTTAaagaaacataacaaaaaaatgaaagttggaTGGTTTCTCCACACCCCTTTTCCATCTTCTGAAATTCACAGGACACTGCCGTCTCGTTCAGAGCTCCTGCATTCCGTTCTTGCCGCTGATGTAGTTGGTTTTCACACGTACGATTATGCAAGACATTTTGTTAGTGCTTGTACTCGCATCCTTGGACTTGAAGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTAACCCGAGTTGCTGCATTTCCAATTGGGATAGACTCAGAACGATTTATACATGCTCTTGACCTTCCTCCAGTACAAGATCACATCAAAGAATTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAAaaatttttggaagaaaatgCTTATTGGCGTGATAAAGTTGTTTTGCTTCAAATCGCTGTCCCGACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGTCGCATCAATGGCAGATTTGGAACATTGACTACAGTTCCTATACATCACTTGGATCGCTCACTTGACTTTCATGCACTATGTGCTTTGTATGCTGTTACTGATGTAGCTCTAGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCCTgccaagagaaaaagaaaggggtCCTCATTCTTAGTGAATTTGCTGGTGCAGCACAGTCTCTTGGTGCTGGGGCACTTCTTGTCAACCCCTGGAACGTTACAGAAGTTGCTGCTGCAATTGCCAAGGCTCTGCATATGCCATCTGcggaaagagaaaagagacaTAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCTGGAACTTTTGTAAGTGAACTAAATGATACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCGCCTTGGCTTCCAACCAAGACTGCAATTGAACGTTATCAGCAGTCAACTAATCGATTGCTCATTTTGGGATTCAATGGAACTTTGACTGAACCAGTCGAGAAAACAGGGGATCAGATTAAAGAAATGGAAGTTAAGGTGCATCCAAAATTGAGACAACCCTTGACAGCACTATGCAGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGTAGACAAGTCCTAGATGATAACTTCAAAGAATATGACATGTGGTTGGCAGCTGAGAATGGAATGTTTTTACATCCTTCAAAGGGTGAGTGGATGACAACAATGCCAGAGCATCTGAATATGGAATGGGTAGACAGCGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACACCTCGGTCacattttgattttgaagaaAGGGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACTGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGAAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACAAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCCATGACATCACCAATTGATTGTGTTCTTTGCATAGGACATTTTCTGGGGAAGgatgaagatatttattcattttttgagCCGGATCTCCCCTCTATTGGTGTGGGTCTTCCAAGAACCAAGGTAACAACAGATGGAGTTGAGAGGAAACCATCTTTGAAGGTCCCTGCTAGTAAGAGTGGACCAAAGTCATCTCAAAATAGGGCACAACGACCAGTGTCAAATTCTGAGAAGAAAACAGATAACCATATATGCAGTACACCACGAAGGCCACCACCTGAAAAGGTATCATGGAACGTCCTTGACCTTAAGAAAGAGAATTACTTCTCTTGTGCTGTTGGACGAACTCGAACAAATGCTCGGTATACGCTTGATTCACCAGACGATGTTGTTTCATTTCTGAAGGAACTAGCGGATGCTTCTTTCAACCTTTACCACTGA 2775 0.4281 MPGNKYNGNSNDITDRVGRLVRDRELRKSARASHLNEPSENNGTRVSGEAFEHEHVRLREEENVGDVAEGGAATKGIGEERQEVKPFRQRLLVVANRLPVSAVRKGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADVVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIHALDLPPVQDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNVTEVAAAIAKALHMPSAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTRQVPPWLPTKTAIERYQQSTNRLLILGFNGTLTEPVEKTGDQIKEMEVKVHPKLRQPLTALCSDPNTTVVVLSGSGRQVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFDFEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDCVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRTKVTTDGVERKPSLKVPASKSGPKSSQNRAQRPVSNSEKKTDNHICSTPRRPPPEKVSWNVLDLKKENYFSCAVGRTRTNARYTLDSPDDVVSFLKELADASFNLYH 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1647 924 TIGRFAM T6PP: trehalose-phosphatase 586 915 IPR003337 GO:0003824|GO:0005992
Ssu3g1647 924 Gene3D - 677 759 - -
Ssu3g1647 924 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 89 557 - -
Ssu3g1647 924 Gene3D - 590 817 IPR023214 -
Ssu3g1647 924 Pfam Glycosyltransferase family 20 90 555 IPR001830 GO:0003824|GO:0005992
Ssu3g1647 924 SUPERFAMILY HAD-like 587 916 IPR036412 -
Ssu3g1647 924 Gene3D Glycogen Phosphorylase B; 82 336 - -
Ssu3g1647 924 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 90 555 IPR012766 GO:0003825|GO:0005992
Ssu3g1647 924 MobiDBLite consensus disorder prediction 822 870 - -
Ssu3g1647 924 CDD HAD_TPP 588 821 - -
Ssu3g1647 924 MobiDBLite consensus disorder prediction 836 851 - -
Ssu3g1647 924 Pfam Trehalose-phosphatase 593 812 IPR003337 GO:0003824|GO:0005992
Ssu3g1647 924 Gene3D Glycogen Phosphorylase B; 337 540 - -
Ssu3g1647 924 CDD GT20_TPS 90 555 IPR001830 GO:0003824|GO:0005992
Ssu3g1647 924 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 916 IPR001830 GO:0003824|GO:0005992
Ssu3g1647 924 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 30 916 - -
Ssu3g1647 924 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1647 Ssu-Chr3 47578000 47595283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1647 1 919 Trehalose Biosynthesis Gene Families AT1G78580 76.508 0.0 1454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1647 K16055 - gmx:100797320 1696.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1289 8 23493520 23506726 Ssu3g1647 3 47578000 47595283 ECH
Ssu3g1647 3 47578000 47595283 Ssu3g1647 3 47578000 47595283 ECH