Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1642 ATGTCTCAACCTAAGAACCCCAAAATGAACTCCACCACCACATTCCTCAACGACCTACCTCCCCTCAAGAGACTAAGACTcatgcaacaacaacaacaacaacaacaacaacaacatcataaCACTTCACCTTTACCCGCCAAAAAACGCAAGGAGTCTCGCACCCCCACCACCGTTTATAATCATTCCCTCCCCGCCAAAAAAAGGGTATGGGCCCTGCAACCCTCAAACGACGCCGTTCCCCCCTTCGACCTCAACGTCGAATACAACCCCAACCCACCCCTCGAAGACCCCGAAGACGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACCGACGGCGACCCTGCGGACCCAATCGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCAACCCCTTATCGAAGGGCATCCCCGAGGGAGACTGGTTCTGCGAACGGTGTCGTTTCGGAAAGGATACCAGCAACGCGCGTTGCGCGCTGTGCCCGGCGAAGGAGGGGGCGATGAAGCGCACCACGGAGGGCGCGTGGGCGCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTCTTCTGCGACCCCGAAGGGAGGGAGGGGATCGACTGCTCCAAGGTTCCGAGGAAGAGGTGGGAGGAGAGGTGCTACCTTTGCGGGTGTTGCGATGGTTGTGCCTTGGTGTGTTCCGAGCCCGAGTGTGGGTTGGGCTTTCATATTACCTGTGCGCTGAGGGAGGAACTTTGGATTGAGTACAAGGAAGGGAAGAAGGTGGGCACTATCGTTGCTGGCTTCTGCAAAACCCACACTGCAGTTTGGGAAAAGCAACAGCAATCCGGGAAATACAAAATTGTTGCCGTTGAAGATGAAAAGTag 885 0.5458 MSQPKNPKMNSTTTFLNDLPPLKRLRLMQQQQQQQQQQHHNTSPLPAKKRKESRTPTTVYNHSLPAKKRVWALQPSNDAVPPFDLNVEYNPNPPLEDPEDDDGILCCVCQSTDGDPADPIVFCDGCDLMVHASCYGNPLSKGIPEGDWFCERCRFGKDTSNARCALCPAKEGAMKRTTEGAWAHVVCALFVPEVFFCDPEGREGIDCSKVPRKRWEERCYLCGCCDGCALVCSEPECGLGFHITCALREELWIEYKEGKKVGTIVAGFCKTHTAVWEKQQQSGKYKIVAVEDEK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1642 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 159 IPR013083 -
Ssu3g1642 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 275 IPR013083 -
Ssu3g1642 294 MobiDBLite consensus disorder prediction 26 43 - -
Ssu3g1642 294 ProSiteProfiles Extended PHD (ePHD) domain profile. 161 273 IPR034732 -
Ssu3g1642 294 SMART PHD_3 105 154 IPR001965 -
Ssu3g1642 294 SMART PHD_3 218 273 IPR001965 -
Ssu3g1642 294 CDD PHD_BRPF_JADE_like 105 153 - -
Ssu3g1642 294 Pfam PHD-zinc-finger like domain 163 272 - -
Ssu3g1642 294 MobiDBLite consensus disorder prediction 1 18 - -
Ssu3g1642 294 ProSiteProfiles Zinc finger PHD-type profile. 103 156 IPR019787 -
Ssu3g1642 294 Pfam PHD-finger 106 154 IPR019787 -
Ssu3g1642 294 ProSitePatterns Zinc finger PHD-type signature. 106 153 IPR019786 -
Ssu3g1642 294 SUPERFAMILY FYVE/PHD zinc finger 94 169 IPR011011 -
Ssu3g1642 294 PANTHER PHD FINGER PROTEINS 99 291 - -
Ssu3g1642 294 PANTHER PHD FINGER PROTEINS 16 93 - -
Ssu3g1642 294 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 93 - -
Ssu3g1642 294 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 99 291 - -
Ssu3g1642 294 MobiDBLite consensus disorder prediction 1 61 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1642 24 294 C2H2 Transcription Factor Family AT3G14740 51.515 9.84e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu3g1642 zf-HC5HC2H_2 3.9e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1642 K11380 - gmx:100802652 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1642 3 47288435 47291026 Ssu3g1642 3 47288435 47291026 ECH