Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1635 ATGACTTGTTTCCCATTCTCATTTGGTAAGAAAGTGCCTTTTGTGGCAAAACATGATCCCGATATTGATGAAGAACTTTCAGGCATTCAAAATGTAAGAATCTATACCTACAAAGAACTAAGAGTTGCCTCTGACAATTTCAGTCCGGCTAATAAAATTGGGCAGGGAGGCTTTGGTTCCGTTTATAAGGGATTGCTAAAAGATGGGAAAGTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAAGTCAAGGGGTAAAGGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTTTATGGTTGTTGTGTGGAAGGGAATCATCGAATATTAGTCTACAATTATCTTGAGAACAATAGCCTTGCGCTAACCCTTCTAGGTTCAGGTCACAGTAATATCGTTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGGTTGCACGTGGCCTTGCCTATCTTCATGAGGAAGTACGACCACATATTGTTCACAGGGACATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATCCCATCATACATGACTCATGTCAGCACACGTGTGGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTGACACGTAAAGCAGATATTTACAGCTTTGGTGTCCTCCTTGTGGAGATAGTTAGTGGAAGATGTCACACAAATACACGGTTACCGATAGGAGAGCAATATCTTTTAGAAAGGACGTGGGAACTTTATCAGCAAAGGGAATTGGTAGGGCTTGTAGACATATCACTAAACGGGTATTTCGATGCCGAGGAGGCTAGTAGATTTCTGAAAATTGGACTACTTTGCACTCAAGACACGTCGAAACTCCGGCCATCCATGTCTTCTGTGGTCAAGATGCTCAGGGGAGAAATGGATGTTGATGAAAGTAAGATAACAAAGCCAGGCTTGATTTCAGATTTTATGGACCTTAGAATCAGAGAAGAAAAAGGTGGTGATATTGATACCAAGGCTTCATCTTCGTACAATGCATCCTCTGCCTCAGACAGCCAGGGTAATACCATGTCATATGCTGCAACTACAACCTTCACCGTGAAATATGATCAAAGCTTGTAA 1167 0.4096 MTCFPFSFGKKVPFVAKHDPDIDEELSGIQNVRIYTYKELRVASDNFSPANKIGQGGFGSVYKGLLKDGKVAAIKVLSAESSQGVKEFMTEINVISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLALTLLGSGHSNIVFDWKTRSRICIGVARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQYLLERTWELYQQRELVGLVDISLNGYFDAEEASRFLKIGLLCTQDTSKLRPSMSSVVKMLRGEMDVDESKITKPGLISDFMDLRIREEKGGDIDTKASSSYNASSASDSQGNTMSYAATTTFTVKYDQSL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1635 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 371 - -
Ssu3g1635 388 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Ssu3g1635 388 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1635 388 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Ssu3g1635 388 PANTHER - 2 371 - -
Ssu3g1635 388 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Ssu3g1635 388 CDD STKc_IRAK 53 318 - -
Ssu3g1635 388 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Ssu3g1635 388 ProSiteProfiles Protein kinase domain profile. 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1635 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Ssu3g1635 388 SMART serkin_6 47 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1635 Ssu-Chr3 46598257 46603245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1635 14 331 Receptor kinase-like Gene Family AT1G53430 54.545 5.01e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1635 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1635 - - gmx:100800503 696.041