Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1634 ATGTGGACGGAAGAAAGAGATTGGATCTGCCCCTTTGAGACTATGTTGGCGCGCTTGGTGGAGTGCAGCATCTGTGGGCGTAACAGATGGAAGAGCAGCGATGGGGCAAGGATGGACTTGGAGGTGATAAAGGTGGTGGCGGAAGGCGGCTACGGGAGAGTGTACCGCTGCCGCGACCTCGACACTGGCCTCGTCGTAGTCATGAAACAGATCTCCATCGTTGGCATCAGCCAAGGCGTTCCAGCTACCATCATCCGCGAAGTGTCGTTTCTGAAAGAACTCAACCACATCAACATCGTCTCGTTGCTCAAACTAGGAACCAGTGACAACAAATTTGTTAACCTCGTTTTCGAGCATCTTGATTGTGATCTTCATCACTACATCCAGGACAGACGTTACCCTAAGGATGCGATCACTAGAAAGCGTCTCATGTTCCAAATACTTTCTGCTGTGGCATACTGTCACTCGCGTAAGGTTCTGCATAGAGATTTGAAACCGAGGAATCTGCTGATTGATCGTCCCAGAAGGTTGATCAAGCTGGCGGATTTCGGTTTGGCAAGAGAATTTGGAGATCCTGACATTTTATATACTAAGAATATAGGAACTTGCTGGTATAGGGCACCTGAAATCTTGTGTAACTCAAGTCAATATTCAACTCCAGCTGATTTGTGGTCTGTGGGCTGTATATTTGCTGAGATGGTAATTCGACACCCTTTATTCCAAACTATTAATTGCCGGGATGAATTGGAAGCGATCTTCAGACTGTTAGGTACCCCGACAGAGGACACCTGGCCAGGGATCACTAAATTAACGTCTAACCTTCATACCTACCCCAAATTTGTTCCGTTGGGCCTGGAAACATTTGTTACTGATCTGGAACGAGTTGGCCTGAATCTTTTATCAATAATGCTTTGCCTGAACCCAAGTAAAAGGATTTCTGCGGAAGCTGCTCTAAAGCATGCTTACTTTAAGGACATGAATTTGgtTTTTAAAGCAAAGTCAGCGGAGCAGCCGTTGAGATGCATTCCCTTTCCATGA 1038 0.4634 MWTEERDWICPFETMLARLVECSICGRNRWKSSDGARMDLEVIKVVAEGGYGRVYRCRDLDTGLVVVMKQISIVGISQGVPATIIREVSFLKELNHINIVSLLKLGTSDNKFVNLVFEHLDCDLHHYIQDRRYPKDAITRKRLMFQILSAVAYCHSRKVLHRDLKPRNLLIDRPRRLIKLADFGLAREFGDPDILYTKNIGTCWYRAPEILCNSSQYSTPADLWSVGCIFAEMVIRHPLFQTINCRDELEAIFRLLGTPTEDTWPGITKLTSNLHTYPKFVPLGLETFVTDLERVGLNLLSIMLCLNPSKRISAEAALKHAYFKDMNLVFKAKSAEQPLRCIPFP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1634 345 SUPERFAMILY Protein kinase-like (PK-like) 41 327 IPR011009 -
Ssu3g1634 345 PANTHER CELL DIVISION PROTEIN KINASE 18 329 - -
Ssu3g1634 345 Gene3D Transferase(Phosphotransferase) domain 1 122 339 - -
Ssu3g1634 345 PANTHER CYCLIN-DEPENDENT KINASE 18 329 - -
Ssu3g1634 345 ProSiteProfiles Protein kinase domain profile. 40 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1634 345 Gene3D Phosphorylase Kinase; domain 1 39 120 - -
Ssu3g1634 345 Pfam Protein kinase domain 42 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1634 345 SMART serkin_6 40 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1634 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Ssu3g1634 345 CDD STKc_CDK_like 41 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1634 Ssu-Chr3 46591534 46594872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1634 41 327 Core Cell Cycle Gene Families AT3G48750 50.694 5.23e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Ssu3g1634 Pkinase 1.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1634 K02206 - gmx:100799974 474.552