Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1633 ATGACGGAGAAAGTTCCTGGGATTGAAGAAGCTGTTGAGCCTCCAGCTTCATCTCAAACATCTGGTGATGTGCCACATAATATGGAAACAGAACAAATGACTCCTACTGAGTATTATTCTATTATCAGTAGGAATGGGGTTGGGACCACAGGAAAATGCATACCTTTACTTGTGAATCTCTTCAAAGTTGCTGTTAATGCTCCAGACACAGTGTTTTTCCAGTATAGTGTTACTATTACTTTAGAAGATAAACGAGCTGTTGAAAGCAAGGGCATTGGGAGAAAAGTGATTGATAGGCTTTACCAAACATACTCTTCTGAACTTGGTGGCAAAAGGTTTGCCTACGACGGAGGGAGAGCTTTGTACACAGTGGGTCCTTTGCCGCTAAATAAGTACGAGTTCAAAGTGTTGCTGGAGGAAACATTTACAAAATGTAGTTCTGAGAGTCCTGGTGCTAATGGAGGCCTTCGCGAGGAAACTAAAAGGTCAAAACATTCATTTGTGTCAAAGACATTCATAGTGGAGATAAGTTTTGCTGCCAAAATACCCTTGCAGTACATTGCTATTGCCCTTAGTGTGGTTGAGTCGGATGCTAATTCTCAAGATGCTTTGAGAGTGCTTGATACTGTACTGAGGCAGCGAGCAGCTAACTGTGGGTGTCTCTTGGTAAGACAATCTTTTTTTCATGATGACTCGAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCCAGGGTTTTCATTCCAGTTTTCGTCCTACGCAGCGAGGATTGTCTCTCAATATGGacATGTCAACAACTATGATCATAAAACCTGGACCTGTAATTGATTTTCTGCTATCAAATCAGCAAGTGAAGGAACCCCGTTATATTGACTGGGCAAAGGCCcaaaaaatgcttaaaaatttAAGGGTGCAAGCAACTCATCGTCaccaagaatttaaaatttctggCTTGAGTGAGAAACCATGCATTCAGCAACTTTTTAGTATGAAGGTTAAAAATGACAATGGCAATAATGGAGGGCAGACCGTGGATATTACTGTATATGAATATTTTGCCAAACACTGTGGCATAGAGCTGACATCATCTGCTTATCTTCCATGTCTTGATGTTGGGAAGCCAAAACGGCCCAATTATCTTCCCCTGGAGCTATGTTCACTTGTTTCCCTCCAGCGGTATACAAAGGTATTATCTCCTATGCAAAGAGCTTCTTTAGTTGAAAAATCACGCCAAAAGCCTCATGATAGAatcaaaattctgaaaaatgcTGTAGGAAATTATTGCTACGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTATTGAGAAACAATTGACTCTGGTTGAAGGTCGTGTTCTTGAGGCACCAAAGTTGAAGGTTGGTAAGAATGATGATTGCTTCCCCCATAATGGAAGGTGGAACtttaacaagaagaCACTTCTACAACCATCACATATTGAGTTTTGGGCTGTTGTCAACTTTTCTGCAAGTTGTGATACTAGTTACATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGACCATATACTTTGATAGAGGAGGAACCACAGTTGAGAAGATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTACATCAAAACTTAATAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGaaaaattgtgatatatatGGGCCTTGGAAAAAGAAGTGTCTGGGTGAATTTGGTGTTGTCACACAATGCATTTCCCCTCTCAAGATCACTGATCAATACCTTACTAATGTACtccttaaaatcaattctaagCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGTTCACTTGGTCGTTCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGACATTGGCCACTGATTTCAAGGTATAGAGCTTCTGTGAGAATGCAGGCATCTAAGGTAGAGATGATTGATGCTCTATACAAGCCATTGGAAAATGGGAGTGATGATGGTATTATCAGAGAATTGCTTTTAGATTTCTATGAATCAAGTAATGGACGCAAGCCAACTCAAATTATTGCCTTCAGGGATGGAGTTAGTGAATCACAATTTAAACAAGTTTTGGATATTGAGCTTAACCAGATAATCAAGGCCTATCAACATCTTGGTGAGGTTAATGTTCCCAAGTTCACCGTGATTGTGGCACAGAAAAATCATCATACAAAGCTGTTTCTGGCTAATGGTGTGGAAAATGTTCCTCCTGGGACAGTTGTCGACACAACAATCACACATCCaagaaattatgatttttacatGTGTGCTCATGCAGGGATGATTGGAACATCTAAGCCTGTACATTATCATGTGTTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTACAAAATTTGATCCATTCGCTGTCCTATGTGAACCAAAGAAGCACGACTGCAACCTCAGTTGtgGCACCCATATGCTATGCTCACCATGCTGCAGCTCAGATGGgacaatttttgaattttgatgatttatcAGAAACGTCTTCAAGTCCCGCTTCAGAGGGAAACATCCCCATCCCAGAGCTTCCAAGGTTGCATAAGAATGTCAGGAGTTCCATGTTCTTCTGTTGA 2715 0.3948 MTEKVPGIEEAVEPPASSQTSGDVPHNMETEQMTPTEYYSIISRNGVGTTGKCIPLLVNLFKVAVNAPDTVFFQYSVTITLEDKRAVESKGIGRKVIDRLYQTYSSELGGKRFAYDGGRALYTVGPLPLNKYEFKVLLEETFTKCSSESPGANGGLREETKRSKHSFVSKTFIVEISFAAKIPLQYIAIALSVVESDANSQDALRVLDTVLRQRAANCGCLLVRQSFFHDDSRNFTDVGAGVTAVQGFHSSFRPTQRGLSLNMDMSTTMIIKPGPVIDFLLSNQQVKEPRYIDWAKAQKMLKNLRVQATHRHQEFKISGLSEKPCIQQLFSMKVKNDNGNNGGQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKVLSPMQRASLVEKSRQKPHDRIKILKNAVGNYCYDDDPVLAACGISIEKQLTLVEGRVLEAPKLKVGKNDDCFPHNGRWNFNKKTLLQPSHIEFWAVVNFSASCDTSYISRELIRCGMSKGINIERPYTLIEEEPQLRRSNPVARVERMFDLLTSKLNKEPKLILCVLPERKNCDIYGPWKKKCLGEFGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHSSLGRSDIPSIAAVVGSRHWPLISRYRASVRMQASKVEMIDALYKPLENGSDDGIIRELLLDFYESSNGRKPTQIIAFRDGVSESQFKQVLDIELNQIIKAYQHLGEVNVPKFTVIVAQKNHHTKLFLANGVENVPPGTVVDTTITHPRNYDFYMCAHAGMIGTSKPVHYHVLLDEIGFSADGLQNLIHSLSYVNQRSTTATSVVAPICYAHHAAAQMGQFLNFDDLSETSSSPASEGNIPIPELPRLHKNVRSSMFFC 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1633 904 Pfam Piwi domain 560 867 IPR003165 GO:0003676
Ssu3g1633 904 Pfam N-terminal domain of argonaute 54 211 IPR032474 -
Ssu3g1633 904 Gene3D paz domain 267 395 - -
Ssu3g1633 904 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Ssu3g1633 904 CDD PAZ_argonaute_like 273 390 - -
Ssu3g1633 904 SUPERFAMILY Ribonuclease H-like 544 868 IPR012337 -
Ssu3g1633 904 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Ssu3g1633 904 SMART PAZ_2_a_3 274 408 IPR003100 GO:0005515
Ssu3g1633 904 MobiDBLite consensus disorder prediction 1 28 - -
Ssu3g1633 904 Pfam PAZ domain 277 407 IPR003100 GO:0005515
Ssu3g1633 904 Gene3D - 627 904 IPR036397 GO:0003676
Ssu3g1633 904 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 34 903 - -
Ssu3g1633 904 Gene3D - 455 621 - -
Ssu3g1633 904 PANTHER PROTEIN ARGONAUTE 6 34 903 - -
Ssu3g1633 904 SUPERFAMILY PAZ domain 268 431 IPR036085 GO:0005515
Ssu3g1633 904 MobiDBLite consensus disorder prediction 14 28 - -
Ssu3g1633 904 Pfam Argonaute linker 1 domain 223 272 IPR014811 -
Ssu3g1633 904 Pfam Argonaute linker 2 domain 420 462 IPR032472 -
Ssu3g1633 904 ProSiteProfiles PAZ domain profile. 301 391 IPR003100 GO:0005515
Ssu3g1633 904 SMART DUF1785_2 221 273 IPR014811 -
Ssu3g1633 904 CDD Piwi_ago-like 435 862 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1633 Ssu-Chr3 46559232 46568553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1633 17 904 Eukaryotic Initiation Factors Gene Family AT5G43810 36.237 6.72e-166 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1633 K11593 - gmx:100778875 1624.76