Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1630 atgTTCGTTTCTTCTTCATCACATGTTCCCCGTTGGCTCCAAGTCCTCCTCACGGAGAAGTTTTACAACGCTTGCATAATTCATGAAGAGGCgaagaagaatgaaaagaaCGTGTATTGCTTGGATTGTTGCGTCAGTCTCTGCCCTCACTGTTTGTCTCCTCACCGCTCTCATAGACTCTTACAGATTAGAAGATATGTCTATCATGATGTTATACGGTTGGATGATGCTGCAAAGTTAATAGACTGCACTTCTGTTCAaTCCTACACAACCAACAGTGCAAAAGTGGTATTTTTAAACCAAAGGCCACAGACAAGGAACTTCAGAGGCTCCGGCAATTTCTGCAGCACCTGTGACAGGAGTCTGCAAGACCCATACCATTTCTGCTCCCTCTCTTGCAAGaTCAATTATCTCATCAGAACAAGTTCTCTCTGCGGTTACCTCCTCGAGTGCAACTACTTGCCGTTACCGGAATCTGGGCTGGACGATGGTTTGATGACGCCTGACTCTGTCCTCGAACCGTCCGGTTCGGCCCGAACGTCATCCGGTTCGGGAGGGTATGGCGGAGTGGATTGCAGGACCACCCTGGCTTGCACTGCCACCACTGAGATTGTGAGGAAGAAGAGGACCGGCGGGTCCACTTTCCGGCCACCATGCCGTCCGGCGTGCTCGCCGGTGTCGGAAATCTCGGTGGGCCTGATGAACCGGCGGAAAGGGAACCCCCAGAGGGCCCCACTGTATTGA 744 0.5054 MFVSSSSHVPRWLQVLLTEKFYNACIIHEEAKKNEKNVYCLDCCVSLCPHCLSPHRSHRLLQIRRYVYHDVIRLDDAAKLIDCTSVQSYTTNSAKVVFLNQRPQTRNFRGSGNFCSTCDRSLQDPYHFCSLSCKINYLIRTSSLCGYLLECNYLPLPESGLDDGLMTPDSVLEPSGSARTSSGSGGYGGVDCRTTLACTATTEIVRKKRTGGSTFRPPCRPACSPVSEISVGLMNRRKGNPQRAPLY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1630 247 PANTHER - 10 247 - -
Ssu3g1630 247 ProSiteProfiles Zinc finger B-box type profile. 20 63 IPR000315 GO:0008270
Ssu3g1630 247 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 10 247 - -
Ssu3g1630 247 Pfam PLATZ transcription factor 64 135 IPR006734 -
Ssu3g1630 247 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1630 Ssu-Chr3 46189097 46190733 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu3g1630 PLATZ 2.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1630 - - gmx:100787153 484.952