Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1627 ATGGTGCCACTTGTGTACATACTCTTAGCTCTCCCTGTGTTGGTATTGATCCTCTTCAACAAACACAGAGCCATAAAGAACCCACCAACCCATCGTCCACCAGGTCCAAGAGGCCTTCCCATCGTTGGCAACCTTCTCCAACTTGACAGTTCAAATCTGAATTTCCAACTGTGGCAGCTCTCAAAGACCTATGGTCCCCTTTTCTCCCTCCAAATTGGCTTTAAGCCAGCCATTGTTGTTTCCTCTCCTAAACTAGCCAAAGAGATTCTCAGAGATCATGATCTTGATGTGTGCAGCAGGCCACCCTCGCTTGGCCCTCTAAAATTGTCTTACAATGGGTTAGAGATGATTTTCTCTCCCTACAATGACTACTGGAGAGACATTAGAAAAATTTGCGTGGTCCATTTCTTCAGCTCCAAACGGATCCCTAGCTTTTCCCACGTGAGAAAATCTGAGGTCAAGCTAATGATGGAGATGATATCCGGGCACGTTTGTTCTTCCAAAATAACGAATTTGAGTGAGGTTATAATGTCGGTCTCAAGCGCTATTATATGTAGGATTGCTTTCGGGAGGAAGTACGATGAGGAAGGTGCTGAAAGGAGCAGGTTCCATGGGCTGCTTAACGAGTCACAGGCtatgtttctttccttttttgtttcgGATTACATTCCATCCTTGGGGTGGATTGACAAACTCACGGGGTTGCTTGCTCGTCTTGAAGAGACTTTCAAGGCGTTGGATGTGTTTTTCCAAGAAGTCATCGATGAGCACCTCGATCCTAATAGGGGGAAACAAAATGACGAGGAGGATATTGTTGAGCTGCTGCTTGAGCTAAAGAAGCAGGGTCGCTTGTCAATAGACCTCACCAATGATCAAATCAAAGCTATCCTCTTGGACATACTTGTAGCAGGTACTGATACAACTGCAGCTACATCCGTGTGGGTGATGACTGGATTAATGAAGGACCCAAGAGTAATGGCCAAAGCTCAAGAAGAAATTAGAAATCTGTGTGGCAACAAAGAGTTCATAGAGGAAAAGGATGTTCAAAAGCTTGTATATCTGAAAGTAGTGATAAAAGAGACACTGAGGTTTTATGCACCAACACCACTGGTACCAAGAGAAGCCATTAGAAGTTTCACAATAGATGGGTATGAAATAAAACCCAAGACAATAGTGTATGTGAATGGTTGGGCAGTTCAGAGGGACCCTGAAGCTTGGAAAGACCCAGAAGAATTTTATCCAGAGAGGTTCTTAAACAATGAGATAGATTTTAAGGGACAAGATTTTGAGCTGATTCCTTTTGGTGCAGGGCGTAGAATTTGCCCAGGCATGTCACTGGGAATGGCCACAGTGGAGCTTCATAACTGCAAACCTTCTTAA 1380 0.4355 MVPLVYILLALPVLVLILFNKHRAIKNPPTHRPPGPRGLPIVGNLLQLDSSNLNFQLWQLSKTYGPLFSLQIGFKPAIVVSSPKLAKEILRDHDLDVCSRPPSLGPLKLSYNGLEMIFSPYNDYWRDIRKICVVHFFSSKRIPSFSHVRKSEVKLMMEMISGHVCSSKITNLSEVIMSVSSAIICRIAFGRKYDEEGAERSRFHGLLNESQAMFLSFFVSDYIPSLGWIDKLTGLLARLEETFKALDVFFQEVIDEHLDPNRGKQNDEEDIVELLLELKKQGRLSIDLTNDQIKAILLDILVAGTDTTAATSVWVMTGLMKDPRVMAKAQEEIRNLCGNKEFIEEKDVQKLVYLKVVIKETLRFYAPTPLVPREAIRSFTIDGYEIKPKTIVYVNGWAVQRDPEAWKDPEEFYPERFLNNEIDFKGQDFELIPFGAGRRICPGMSLGMATVELHNCKPS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1627 459 Gene3D Cytochrome P450 26 454 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS E-class P450 group I signature 355 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PRINTS P450 superfamily signature 356 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 5 453 - -
Ssu3g1627 459 Pfam Cytochrome P450 33 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 PANTHER CYTOCHROME P450 71B11-RELATED 5 453 - -
Ssu3g1627 459 SUPERFAMILY Cytochrome P450 33 453 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu3g1627 459 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Ssu3g1627 459 Coils Coil 326 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1627 Ssu-Chr3 46044587 46052496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1627 33 453 Cytochrome P450 AT4G31500 48.471 1.73e-143 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1627 - - gmx:100806470 738.799