Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1625 ATGGGAGCTGCCTATGGCATAGTGAAGAATGGCGTGGGCGTGGCTCCCATGGGTGTGATGAGACCTAAGCTGGTGATGAAGTCTATTGTTCATGTTGTCATGGATGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTTATAATCAGTACCGGTTTTCTGGTACAATTGTTGGAGCAGGGGATGTGTCTCCAAGATGGTCAAATTGTCAGTGGCAGTCGTTAA 225 0.4533 MGAAYGIVKNGVGVAPMGVMRPKLVMKSIVHVVMDGVLGIYGLIIAVIISTGFLVQLLEQGMCLQDGQIVSGSR 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1625 74 Pfam ATP synthase subunit C 1 49 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu3g1625 74 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 53 - -
Ssu3g1625 74 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu3g1625 74 PRINTS Vacuolar ATP synthase 16kDa subunit signature 3 27 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu3g1625 74 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 53 - -
Ssu3g1625 74 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 1 53 IPR011555 GO:0033179|GO:0046961|GO:1902600
Ssu3g1625 74 Gene3D - 1 73 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1625 Ssu-Chr3 46021119 46021627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1625 1 52 Primary Pumps ATPases(2) AT1G19910 86.538 7.12e-23 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1625 K02155 - oeu:111374923 86.6557