Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1618 ATGGGCCTGCTCATGCTGAAACTTCTAATCTTCCTCATATGGCCTTTTTCTCCATCTCCTTCCAGCTCCATGACCGAGCTTGACACTCTCATGGCCATCAGAGACTCTCTAGACCCAGAGAACCGTGTGTTGATCTCATGGACTCCCCATTCGGACCCGTGTAGTAGTGCCTCTTTTGAGGGTGTGGCTTGCAATGAGCAAGGTCTTGTTACCAATATTTCACTGCAAGGAAAGGGTCTATCTGGAAGGATATCTGAAGCCGTGGCTGGTCTCAAGAGCTTGACGGGTCTCTACCTTCACTTCAATACCCTCAATGGGATATTACCAAAGGAGATTGCCACATTGACTGAGCTAAGTGATTTGTATCTCAATGTCAATAACCTCTCTGGTGAAATCCCTCGTGAGATTGGCAATACGTCAAATCTTCAAGTTTTGCAGCTTTGTTATAacaagtttagtgggagtaTACCTACTGAACTGGGAAGGTTAAGGAAGCTCAGTGTTGTTGCACtgcaatataatcaattaagtAGCGCAATTCCTGCAAGTTTGGGTGAAGTGGAGACATTGGCGCGATTGGATCTGAGCTTCAATAGCCTTTTTGGTCCAATTCCGGTGACATTGGCTAATGCACCTAAACTGGAGAGTCTAGATATTCGAAACAATTCTCTCTCGGGCAGTATCCCTACAGCTCTAAGACGACTCAAAGGTGGGTTTCAGTACATCAACAACCCTGGTTTATGTGGAACTGGATTTACCAATTTAGATTCTTGCAAAGCAGTAAGCAGTTCAGACCCAGTTAGACCCGAACCATATGAACCTGGTAATATTTCCACCAAAGATCTTCCTGCATCAATTGAACCAAAACCTGAAAACTGCCGCGATGCTCATTGTAAAAGGACACCGAAATCTTcaaaaattggtttggtttttgcGGTGATTGGAGTTATTGTTGCTTCAATTGTTGCTGgactttttttgttcttatggCACCGTTGTCAGAAACAGAAAATTGGAAGTTCTGATAACCGGCTTAGTACTGACCAGACCAAGCAAGTGTGCCAGAAAAGTGCATCTCCTCTTATAAGTTTGGAGTATTCTAATGGATGGGACCCATTAGCCAAAGGTCAAAGTGGTTATTCCCAGGAAGTTCTAGAGAGCTATATGTTCAATCTTGAAGAAGTAGAACGCGCAACTCATAGCTTCTCAGAGGTAAATTTGTTAGGGAGGAGTAATTTTTCATCTGTATACCGGGGGATGTTGAGAGATGGTTCTGTTGTCGTTATAAAGTGCATTGCCAAGACAAGCTGCAAGTCTGATGAAGCTGAATTCTTGAAAGGATTGAAGATATTGACCTCGTTAAGGCATGAAAATCTAGTTCGGTTGAGAGGGTTTTGCTGTTCAAAAGGCCGCGGGAAATGTTTTCTGATTTATGACTCTCTCTCAAATGGGAGTTTGTTACAGTATCTTGATGTTAAGAGAGACAGTGGTAGGGTACTTGAATGGTCCACCAGAGTGTCCATCATTCGTGGTATTGCCAGAGGTATTGGTTATCTGCATAGGAAGAAAGGAAGCAAACATGGTGTAGTTCAGCAGAATATATCAGCtgaaaatatacttttggaTGCTCGGTATAGCGCTTTACTTGCAAATTCAGGAGTGCACAATCTCCTTGCAGATGATGTTGTTTTTTCTGCCCTTAAAGCTAGTGCTGCCATGGGATATCTGCCTCCAGAGTACACGATAACTGGTCGTTTGACCGAAAAGAGTGATGTGTATGCATTTGGAGTGATAGTTTTCCAGCTTCTTACTGGAAAACGTGATATCACTCAGTTAAATTGCCAATGGGTAGAAAGTGTTAGTTTGAAAGATATAGTTGATGAGAATCTTGAAGGGATGTTCTCAGAATCAGAGGCGGTCAAGCTGAGAAGAGTTACTTCGCTTTGCACCTGTGAATCCCCACATCTTCGACCATCTATGGACAATGTAATGCTAGAACTGGGTGATAAATAA 2013 0.4128 MGLLMLKLLIFLIWPFSPSPSSSMTELDTLMAIRDSLDPENRVLISWTPHSDPCSSASFEGVACNEQGLVTNISLQGKGLSGRISEAVAGLKSLTGLYLHFNTLNGILPKEIATLTELSDLYLNVNNLSGEIPREIGNTSNLQVLQLCYNKFSGSIPTELGRLRKLSVVALQYNQLSSAIPASLGEVETLARLDLSFNSLFGPIPVTLANAPKLESLDIRNNSLSGSIPTALRRLKGGFQYINNPGLCGTGFTNLDSCKAVSSSDPVRPEPYEPGNISTKDLPASIEPKPENCRDAHCKRTPKSSKIGLVFAVIGVIVASIVAGLFLFLWHRCQKQKIGSSDNRLSTDQTKQVCQKSASPLISLEYSNGWDPLAKGQSGYSQEVLESYMFNLEEVERATHSFSEVNLLGRSNFSSVYRGMLRDGSVVVIKCIAKTSCKSDEAEFLKGLKILTSLRHENLVRLRGFCCSKGRGKCFLIYDSLSNGSLLQYLDVKRDSGRVLEWSTRVSIIRGIARGIGYLHRKKGSKHGVVQQNISAENILLDARYSALLANSGVHNLLADDVVFSALKASAAMGYLPPEYTITGRLTEKSDVYAFGVIVFQLLTGKRDITQLNCQWVESVSLKDIVDENLEGMFSESEAVKLRRVTSLCTCESPHLRPSMDNVMLELGDK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1618 670 SUPERFAMILY L domain-like 23 236 - -
Ssu3g1618 670 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 669 - -
Ssu3g1618 670 SUPERFAMILY Protein kinase-like (PK-like) 379 666 IPR011009 -
Ssu3g1618 670 Gene3D Ribonuclease Inhibitor 25 140 IPR032675 -
Ssu3g1618 670 Pfam Protein tyrosine and serine/threonine kinase 406 666 IPR001245 GO:0004672|GO:0006468
Ssu3g1618 670 MobiDBLite consensus disorder prediction 265 293 - -
Ssu3g1618 670 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 669 - -
Ssu3g1618 670 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Ssu3g1618 670 Gene3D Transferase(Phosphotransferase) domain 1 481 670 - -
Ssu3g1618 670 ProSiteProfiles Protein kinase domain profile. 402 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1618 670 Gene3D Ribonuclease Inhibitor 141 259 IPR032675 -
Ssu3g1618 670 Pfam Leucine Rich Repeat 213 233 IPR001611 GO:0005515
Ssu3g1618 670 Gene3D Phosphorylase Kinase; domain 1 375 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1618 Ssu-Chr3 45414113 45417614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1618 1 515 Miscellaneous Gene Families AT4G22730 50.562 1.35e-176 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Ssu3g1618 PK_Tyr_Ser-Thr 4.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1618 - - var:108327466 1076.23