Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1612 ATGAAGGCCGTGCCCCTACCCTTTCAGGAATTTAGAGGGAACGGGGTGTTAGATTTTGCTTCTGGTGCTGTTGCTGTTTCAGATTCATTGTTACTCCCACAGCAAGAGCAATTTCTGCAAAGGTGGAACCCCCACAGGGAAAACTGTTGCTATGTGGGCATTGAGCCCACTTCTGGTTTGGACTTCAAAAGGAAAACAAGCCCTCCCACGTCCTCCTCTACACTGTCTTCCTCACGCGGTAGCAGCGGCGGCGGCGGAGGCTGTGGTTCAAACGATATCACCACCAGCGCCACGGCAGCGAAGGTCTCGGTTGAGAAGGAGAACAACGCACCTCAAGTAGGGTTAGAAGTTGGGCAAGGAAGATGTGGGCTGGTAATGGAGGATTGGGAGAGTGTGTTGTCTGAATCACCAGGTCAAGATCATTCCATTCTCAAATTGATTATGGGGGACATTGAGGACCCATCTGTGGGATTGACCAAGCTTTTGCAGGGTGGAAGTGGCTCTCAGGATGTTGAATTCAATGGGGTTGGAGTGGGTTTTAGTTTGGTTGGTCAAAGTGCTGGGCTTGACCCCATTCCTAGTGTCAACTTTGTGAGCAGCATTGACCCTTCTGGTCCTGGGAATTGTTCTGATTTCCCTTTCAATTCCCACAATAATGTTAGCTCCAATGTTCCCAGAGTTGGTTCTGGTGTGAATCCAAACCCTGGGTTCCCTGCTTCAGCTAGCAATCTCTCACCAGTTTCACTCCCTCAGGGTGTGTTTCAGCAACAGCAGCAGCAGCATCAACCAATAGGGCCTCTTGATGAGAAGCTACAAATTCTCAATCCCCAGTTCATTTTGAACCAAAATCAATCTCAGTTTATGCCAAACCCAGGTTTGGTTTTGCCTTTGACATATGCCCAGCTGCAAGAACATCATCAGCTTCTCCCTCAGCCTCCGGCGAAACGCCTGAATTGTGGCCCAAATTATCAGGCTCCAAAGACACCCTTTTTGGACTCTGGCCAAGAGCTGCTACTTCGGAGGCAGCAACAGCAGCTTCAACTTCTTCCTCACCATCTGCTGCAGAGGCCATCCATGGTGGTGGCACCAAAGCAGAAAATGGTGAACCCCGGCAGCGAAGACTTGGCAACCCACCAGCTTCAACAGGCTATAATTGAGCAGCTTTTCAAAGCTGCAGAGCTGATCGATGCCGGCAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCTCCCATTGGGAAGCCTTTTCAGAGGGCTGCTTTTTATTTCAAGGAGGCCTTGCAATTACTTCTTCATTCAAATGGCAACAATAGTTCTTTGACCTTCTCACCCACTGGCCTTTTGCTCAAGATTGGTGCTTACAAATCATTCTCAGAAATCTCACCAGTTCTGCAGTTTGCCAATTTCACTTGTAACCAAGCACTGCTTGAAGCTGTAGAAGGGTTTGATCGCATTCACATAATAGATTTTGATATTGGGTTTGGTGGACAGTGGTCTTCTTTCATGCAAGAGTTAGCACTCAGGAATGGTGGTGCACCTGAACTCAAGATCACTGCATTTGTGTCACCCTCCTACCACGATGAAATTGAGCTCAGTTTCACCCAGGAGAACTTGAAGCAATATGCTGGGGAGATTAACATGTCCTTTGAGCTTGAGATTCTGAGCCTTGAGTCTTTAAATTCTGCTTCCTGGCCCCAGCCACTTCATGACTGTGAAGCTGTTGTGGTTAACATGCCTATTGGCTCTTTCTCAAGTTACCCATCATATCTTCCTTTGGTACTTCGCTTTGTGAAGCAGCTCGTGCCAAAAATTGTGGTTACATTGGATAGAAGTTGTGATCGAACTGACGCACCATTTCCTCAGCATCTGATTTTTTCACTTCAGTCTTATTCAGGGCTGCTTGAGTCACTTGATGCTGTTAACGTTCACCCAGATGTCCTTCAGATGATTGAGAAGTATTATCTTCAACCAGCAATGGAGAAGCTTGTTTTGGGTCGACATGGTTTGCAGGAAAGAACACTTCCTTGGAAAAACCTTCTCATATCATCTGGGTTTTCACCATTGACATTTAGTAACTTTACAGAATCCCAGGCAGAGTGTTTGGTGCAGAGGACTCCTGGTAAGGGATTTCACGTCGAGAAGAGGCAGTCTTCCCTTGTTCTTTGCTGGCAAAGGAAGGATATCATCTCAGTTTCAACTTGGAGATGCTGA 2226 0.4739 MKAVPLPFQEFRGNGVLDFASGAVAVSDSLLLPQQEQFLQRWNPHRENCCYVGIEPTSGLDFKRKTSPPTSSSTLSSSRGSSGGGGGCGSNDITTSATAAKVSVEKENNAPQVGLEVGQGRCGLVMEDWESVLSESPGQDHSILKLIMGDIEDPSVGLTKLLQGGSGSQDVEFNGVGVGFSLVGQSAGLDPIPSVNFVSSIDPSGPGNCSDFPFNSHNNVSSNVPRVGSGVNPNPGFPASASNLSPVSLPQGVFQQQQQQHQPIGPLDEKLQILNPQFILNQNQSQFMPNPGLVLPLTYAQLQEHHQLLPQPPAKRLNCGPNYQAPKTPFLDSGQELLLRRQQQQLQLLPHHLLQRPSMVVAPKQKMVNPGSEDLATHQLQQAIIEQLFKAAELIDAGNPELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHSNGNNSSLTFSPTGLLLKIGAYKSFSEISPVLQFANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELKITAFVSPSYHDEIELSFTQENLKQYAGEINMSFELEILSLESLNSASWPQPLHDCEAVVVNMPIGSFSSYPSYLPLVLRFVKQLVPKIVVTLDRSCDRTDAPFPQHLIFSLQSYSGLLESLDAVNVHPDVLQMIEKYYLQPAMEKLVLGRHGLQERTLPWKNLLISSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDIISVSTWRC 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1612 741 MobiDBLite consensus disorder prediction 63 92 - -
Ssu3g1612 741 Pfam GRAS domain family 385 740 IPR005202 -
Ssu3g1612 741 PANTHER GRAS FAMILY TRANSCRIPTION REGULATOR 8 740 - -
Ssu3g1612 741 MobiDBLite consensus disorder prediction 61 92 - -
Ssu3g1612 741 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 740 IPR005202 -
Ssu3g1612 741 ProSiteProfiles GRAS family profile. 375 740 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1612 Ssu-Chr3 45067372 45069597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1612 352 741 GRAS Transcription Factor Family AT4G00150 56.750 6.15e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g1612 GRAS 1.1e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1612 - - gmx:100792973 1239.56