Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu3g1609 | ATGAATTCTTCTGGCTAcgaacaacaaccacaacaacatgGCTTCGATCTATCTCAATCTCAAACTCCGTCCTATGATCAATCATCACAGCCTTGTTATACCCAAAATTATCCACACGACGACCAACCCCAATTCGAACAAGACCCCACCTCGCTCCCGATCGCCCCTGAACCGCCTCATTCTGCTGGACCCTCACACTTGAACCCGGTCCAGGCTGCGCCGGTTGCCGGTTCGCTCAACCCTGCGGCAGTGGCAGTGGTAGCGGGAGCTCTCGCGCAGCTTGTAGGAAACGTTGACGGGGTGCCAAGGGAACCGATTTGGCCATCTCAATACAGAGGTAGAGGTCGCAGGGGTGGTAGACCATTTAGAGGTGGTGGTCGTGGCCGATTCAATCACCACCGTGGTAGGGGACGTGGGAGAGATGGTGATGGTAGACAGTTCTTATCTCATTCTTCTGAACCCACTATTGCTAATGTAGCAGATGTGCCTGCTGCTGATGGGGACACTTCAGTGATGCAACCATCATCAGTCTCTGGGCAATCATCATTACCTAATCCAGCACAAGTGCCATCTGCACCATTGCAGTCACCACCATGTAAGTTATGGTGTGAAATTTGTAAGGCTGAGTGTAATACTCCAGAAATGTTGGAGCAGCATAAGAATGGAAAGCGACATAGGAAGAATTTGCTTGTGCATGAAGAAGTACAAAGACTCAAAGCTCTAAATGGACAACAGAGTGGAAATATTTCTAATTCTCAATCGAATTTAACAATCCAACCTGAGAAAATTCaggaatttgagaaaaaggGACCAGAAGAAAATATGGGCTCTGAAGCTACAGATGATAATCACAATGATGAAACTGAGCTTCAGAATAATGTAGCAGGGGTTTCCGAAGTTCAAACTGAAGAGCCTCAGGAGGAACCTGGAGACAACTCTGCCATACAGGGTCATGGATTCAAGCGTAAGATGAGAGGAGGCAGAGGAGGTAAATACATGAGGAGTGATGATGGGTCAAGAAAACCAGTGGAACCTCCAAAGTCTAAGCAGGTTACATCTTTCATATGTGAGTTGTGCAATGTTAAATGTGATTCCCAGGTTGTCTACAATAGTCATTTGACAGGAAAAAAGCACTTATCAAATTTCAAGCGTGTCCTTGGCCACCAAGCTTTGAATGGAGAAGCAGGGATCCAACCACTTAACCCTCCTGAGATCAATACTCTATCAAATGCAAATAATTTTCCAGTCCAACAAGGTGTTAGTGTCCAACTAGGCGTTAATGATCCACGGAGCCTTCTGGCTCAGCTCCTGATGACTGTGCTATCCAATGTCCAAGTACCAGCAACAGCACCACTGTCAGGTCCTCTGGCCACTCAGATACAAGCGCCAACATTGGTGGCTGGATCAAGTCATGAACCCCTTTCTCAAAATTTGTCACAGACACAAGTCTCAGATTCCTTTGCACATTTTGAGAGTGAAAATCCTACTGGGGAAACAAAACGTTGGATGTCATCTGTCACACTGCAGCTGGATGAGACTGCAGATTCAAGTAATAATGGTAACACTGAAACTGCAGATGGAAGACCTGCAAAGGAAGAAACCATGGTGAAACTTCCCCAGAATAGTTCAGTTATGACATCAGCAGAAAACCCAGTTGCAGCAAATAAACAAGTACCTTCATAA | 1683 | 0.4498 | MNSSGYEQQPQQHGFDLSQSQTPSYDQSSQPCYTQNYPHDDQPQFEQDPTSLPIAPEPPHSAGPSHLNPVQAAPVAGSLNPAAVAVVAGALAQLVGNVDGVPREPIWPSQYRGRGRRGGRPFRGGGRGRFNHHRGRGRGRDGDGRQFLSHSSEPTIANVADVPAADGDTSVMQPSSVSGQSSLPNPAQVPSAPLQSPPCKLWCEICKAECNTPEMLEQHKNGKRHRKNLLVHEEVQRLKALNGQQSGNISNSQSNLTIQPEKIQEFEKKGPEENMGSEATDDNHNDETELQNNVAGVSEVQTEEPQEEPGDNSAIQGHGFKRKMRGGRGGKYMRSDDGSRKPVEPPKSKQVTSFICELCNVKCDSQVVYNSHLTGKKHLSNFKRVLGHQALNGEAGIQPLNPPEINTLSNANNFPVQQGVSVQLGVNDPRSLLAQLLMTVLSNVQVPATAPLSGPLATQIQAPTLVAGSSHEPLSQNLSQTQVSDSFAHFESENPTGETKRWMSSVTLQLDETADSSNNGNTETADGRPAKEETMVKLPQNSSVMTSAENPVAANKQVPS | 560 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 511 | 525 | - | - | |
Ssu3g1609 | 560 | PANTHER | GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE | 22 | 510 | - | - | |
Ssu3g1609 | 560 | SUPERFAMILY | beta-beta-alpha zinc fingers | 192 | 229 | IPR036236 | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 511 | 560 | - | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 116 | 135 | - | - | |
Ssu3g1609 | 560 | SMART | c2h2final6 | 354 | 378 | IPR013087 | - | |
Ssu3g1609 | 560 | SMART | c2h2final6 | 201 | 225 | IPR013087 | - | |
Ssu3g1609 | 560 | PANTHER | OS06G0651300 PROTEIN-RELATED | 22 | 510 | - | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 169 | 189 | - | - | |
Ssu3g1609 | 560 | Pfam | Zinc-finger of C2H2 type | 202 | 225 | - | - | |
Ssu3g1609 | 560 | Pfam | Zinc-finger of C2H2 type | 354 | 378 | - | - | |
Ssu3g1609 | 560 | Gene3D | Classic Zinc Finger | 334 | 384 | - | - | |
Ssu3g1609 | 560 | Gene3D | Classic Zinc Finger | 190 | 232 | - | - | |
Ssu3g1609 | 560 | SMART | ZnF_U1_5 | 200 | 232 | IPR003604 | GO:0003676|GO:0008270 | |
Ssu3g1609 | 560 | SMART | ZnF_U1_5 | 351 | 385 | IPR003604 | GO:0003676|GO:0008270 | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 329 | 344 | - | - | |
Ssu3g1609 | 560 | SUPERFAMILY | beta-beta-alpha zinc fingers | 339 | 386 | IPR036236 | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 298 | 347 | - | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 536 | 560 | - | - | |
Ssu3g1609 | 560 | MobiDBLite | consensus disorder prediction | 106 | 194 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu3g1609 | Ssu-Chr3 | 44756375 | 44762555 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu3g1609 | 311 | 378 | C2H2 Transcription Factor Family | AT5G61190 | 32.941 | 3.23e-06 | 48.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Ssu3g1609 | zf-met | 3.5e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu3g1609 | - | - | gmx:102666037 | 812.757 |