Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1609 ATGAATTCTTCTGGCTAcgaacaacaaccacaacaacatgGCTTCGATCTATCTCAATCTCAAACTCCGTCCTATGATCAATCATCACAGCCTTGTTATACCCAAAATTATCCACACGACGACCAACCCCAATTCGAACAAGACCCCACCTCGCTCCCGATCGCCCCTGAACCGCCTCATTCTGCTGGACCCTCACACTTGAACCCGGTCCAGGCTGCGCCGGTTGCCGGTTCGCTCAACCCTGCGGCAGTGGCAGTGGTAGCGGGAGCTCTCGCGCAGCTTGTAGGAAACGTTGACGGGGTGCCAAGGGAACCGATTTGGCCATCTCAATACAGAGGTAGAGGTCGCAGGGGTGGTAGACCATTTAGAGGTGGTGGTCGTGGCCGATTCAATCACCACCGTGGTAGGGGACGTGGGAGAGATGGTGATGGTAGACAGTTCTTATCTCATTCTTCTGAACCCACTATTGCTAATGTAGCAGATGTGCCTGCTGCTGATGGGGACACTTCAGTGATGCAACCATCATCAGTCTCTGGGCAATCATCATTACCTAATCCAGCACAAGTGCCATCTGCACCATTGCAGTCACCACCATGTAAGTTATGGTGTGAAATTTGTAAGGCTGAGTGTAATACTCCAGAAATGTTGGAGCAGCATAAGAATGGAAAGCGACATAGGAAGAATTTGCTTGTGCATGAAGAAGTACAAAGACTCAAAGCTCTAAATGGACAACAGAGTGGAAATATTTCTAATTCTCAATCGAATTTAACAATCCAACCTGAGAAAATTCaggaatttgagaaaaaggGACCAGAAGAAAATATGGGCTCTGAAGCTACAGATGATAATCACAATGATGAAACTGAGCTTCAGAATAATGTAGCAGGGGTTTCCGAAGTTCAAACTGAAGAGCCTCAGGAGGAACCTGGAGACAACTCTGCCATACAGGGTCATGGATTCAAGCGTAAGATGAGAGGAGGCAGAGGAGGTAAATACATGAGGAGTGATGATGGGTCAAGAAAACCAGTGGAACCTCCAAAGTCTAAGCAGGTTACATCTTTCATATGTGAGTTGTGCAATGTTAAATGTGATTCCCAGGTTGTCTACAATAGTCATTTGACAGGAAAAAAGCACTTATCAAATTTCAAGCGTGTCCTTGGCCACCAAGCTTTGAATGGAGAAGCAGGGATCCAACCACTTAACCCTCCTGAGATCAATACTCTATCAAATGCAAATAATTTTCCAGTCCAACAAGGTGTTAGTGTCCAACTAGGCGTTAATGATCCACGGAGCCTTCTGGCTCAGCTCCTGATGACTGTGCTATCCAATGTCCAAGTACCAGCAACAGCACCACTGTCAGGTCCTCTGGCCACTCAGATACAAGCGCCAACATTGGTGGCTGGATCAAGTCATGAACCCCTTTCTCAAAATTTGTCACAGACACAAGTCTCAGATTCCTTTGCACATTTTGAGAGTGAAAATCCTACTGGGGAAACAAAACGTTGGATGTCATCTGTCACACTGCAGCTGGATGAGACTGCAGATTCAAGTAATAATGGTAACACTGAAACTGCAGATGGAAGACCTGCAAAGGAAGAAACCATGGTGAAACTTCCCCAGAATAGTTCAGTTATGACATCAGCAGAAAACCCAGTTGCAGCAAATAAACAAGTACCTTCATAA 1683 0.4498 MNSSGYEQQPQQHGFDLSQSQTPSYDQSSQPCYTQNYPHDDQPQFEQDPTSLPIAPEPPHSAGPSHLNPVQAAPVAGSLNPAAVAVVAGALAQLVGNVDGVPREPIWPSQYRGRGRRGGRPFRGGGRGRFNHHRGRGRGRDGDGRQFLSHSSEPTIANVADVPAADGDTSVMQPSSVSGQSSLPNPAQVPSAPLQSPPCKLWCEICKAECNTPEMLEQHKNGKRHRKNLLVHEEVQRLKALNGQQSGNISNSQSNLTIQPEKIQEFEKKGPEENMGSEATDDNHNDETELQNNVAGVSEVQTEEPQEEPGDNSAIQGHGFKRKMRGGRGGKYMRSDDGSRKPVEPPKSKQVTSFICELCNVKCDSQVVYNSHLTGKKHLSNFKRVLGHQALNGEAGIQPLNPPEINTLSNANNFPVQQGVSVQLGVNDPRSLLAQLLMTVLSNVQVPATAPLSGPLATQIQAPTLVAGSSHEPLSQNLSQTQVSDSFAHFESENPTGETKRWMSSVTLQLDETADSSNNGNTETADGRPAKEETMVKLPQNSSVMTSAENPVAANKQVPS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1609 560 MobiDBLite consensus disorder prediction 511 525 - -
Ssu3g1609 560 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 22 510 - -
Ssu3g1609 560 SUPERFAMILY beta-beta-alpha zinc fingers 192 229 IPR036236 -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 1 69 - -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 511 560 - -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 116 135 - -
Ssu3g1609 560 SMART c2h2final6 354 378 IPR013087 -
Ssu3g1609 560 SMART c2h2final6 201 225 IPR013087 -
Ssu3g1609 560 PANTHER OS06G0651300 PROTEIN-RELATED 22 510 - -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 169 189 - -
Ssu3g1609 560 Pfam Zinc-finger of C2H2 type 202 225 - -
Ssu3g1609 560 Pfam Zinc-finger of C2H2 type 354 378 - -
Ssu3g1609 560 Gene3D Classic Zinc Finger 334 384 - -
Ssu3g1609 560 Gene3D Classic Zinc Finger 190 232 - -
Ssu3g1609 560 SMART ZnF_U1_5 200 232 IPR003604 GO:0003676|GO:0008270
Ssu3g1609 560 SMART ZnF_U1_5 351 385 IPR003604 GO:0003676|GO:0008270
Ssu3g1609 560 MobiDBLite consensus disorder prediction 329 344 - -
Ssu3g1609 560 SUPERFAMILY beta-beta-alpha zinc fingers 339 386 IPR036236 -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 1 49 - -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 298 347 - -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 536 560 - -
Ssu3g1609 560 MobiDBLite consensus disorder prediction 106 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1609 Ssu-Chr3 44756375 44762555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1609 311 378 C2H2 Transcription Factor Family AT5G61190 32.941 3.23e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g1609 zf-met 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1609 - - gmx:102666037 812.757