Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1608 ATGGATAAACACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCCAATGGGAGAGCCTTGGGGGGTCACATGCGGTCTCACATGATGAACCTTCCTCTCTCAAAGCCCGAAGAAGCGTCGTTGCGAACCATCCAACTCAGCTTCGAAGCCGAATCagcttcttcttcatcatcatcttcagatgatgatgatgacaagGGTCTCTGTTATGGCCTCAGAGAGAACCCCAAGAGGAGCATTCGCATCGTGGATCCCGAATTTTCGTTTGCAGCTGCAGACACTGGCTCCGTGATCCTCCAAGACAGAGAGAGCGAGACCGAGTCATCCAAGAACAACCCAACTCGTAGAAGATCCAAAAGGCCATGgaataataactattataacaataacaataataccACCAACAGCAACAAGAAGCAAGTTCTCGGTCAGAAGAGTAAGACAGAATCGTGGGTGGACCACGAGCCCGCGAGTTCGGTCTCTGACGCAACCACCGAGGAAGACGTGGCATTTTGTCTCATGATGCTGTCGAGGGACAAATGGAAGAGACAGAACGATCAACCACAATTTGTCGAAGATCAatacgaagaagaagaagatgatgatgaagatgaggaggaagaagaggacGAGGCCTTCGAAGAGAGCGAGGAATCTCAAGAGACGATGAAATTAAGCAAGAACCGAGTACGAGGAAGGTACAAATGCGAGACCTGCGACAAGGTGTTTCAATCTTACCAGGCATTGGGGGGTCACAGAGCGAGTCACAAGAAGATCAAAGTGAACATAAAAGTGGACGGTGATGAAGAAGGGGAATTTCAGCATAGGAAGAAGAGTGGCGTGGAAAAGAAAATCCACGAGTGCCCGGTTTGTTTCAGAGTCTTTGCTTCGGGCCAAGCACTTGGGGGACACAAGAGAACCCACGTTACTGGGTCAGCAACCGCAACAGTTCCATCAAGTTCCGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTCCCTGCTCCAATTGACGACGATGATGCTAGCCAAATCGAGAACTCTGCGGTTTCCGATGCAGAATTCGTCAAAACCCATTAG 1077 0.4429 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPEEASLRTIQLSFEAESASSSSSSSDDDDDKGLCYGLRENPKRSIRIVDPEFSFAAADTGSVILQDRESETESSKNNPTRRRSKRPWNNNYYNNNNNTTNSNKKQVLGQKSKTESWVDHEPASSVSDATTEEDVAFCLMMLSRDKWKRQNDQPQFVEDQYEEEEDDDEDEEEEEDEAFEESEESQETMKLSKNRVRGRYKCETCDKVFQSYQALGGHRASHKKIKVNIKVDGDEEGEFQHRKKSGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSATATVPSSSAKFGNSFIDLNLPAPIDDDDASQIENSAVSDAEFVKTH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1608 358 Coils Coil 194 214 - -
Ssu3g1608 358 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Ssu3g1608 358 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 320 - -
Ssu3g1608 358 SUPERFAMILY beta-beta-alpha zinc fingers 232 307 IPR036236 -
Ssu3g1608 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Ssu3g1608 358 MobiDBLite consensus disorder prediction 190 216 - -
Ssu3g1608 358 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 320 IPR044303 GO:0006355
Ssu3g1608 358 MobiDBLite consensus disorder prediction 93 162 - -
Ssu3g1608 358 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 322 356 IPR044303 GO:0006355
Ssu3g1608 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 312 IPR013087 -
Ssu3g1608 358 Gene3D Classic Zinc Finger 230 307 - -
Ssu3g1608 358 MobiDBLite consensus disorder prediction 117 162 - -
Ssu3g1608 358 SMART c2h2final6 233 255 IPR013087 -
Ssu3g1608 358 SMART c2h2final6 4 26 IPR013087 -
Ssu3g1608 358 SMART c2h2final6 285 307 IPR013087 -
Ssu3g1608 358 MobiDBLite consensus disorder prediction 49 70 - -
Ssu3g1608 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Ssu3g1608 358 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Ssu3g1608 358 Pfam C2H2-type zinc finger 4 27 - -
Ssu3g1608 358 Pfam C2H2-type zinc finger 232 257 - -
Ssu3g1608 358 Pfam C2H2-type zinc finger 285 307 - -
Ssu3g1608 358 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 322 356 - -
Ssu3g1608 358 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Ssu3g1608 358 ProSitePatterns Zinc finger C2H2 type domain signature. 287 307 IPR013087 -
Ssu3g1608 358 MobiDBLite consensus disorder prediction 182 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1608 Ssu-Chr3 44628433 44629509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1608 1 344 C2H2 Transcription Factor Family AT3G60580 43.875 1.93e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g1608 zf-C2H2_6 4.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1608 - - vra:106780254 539.265