Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1604 atggTAACCATTCGTGCAgatgaaattagtaaaattatccGTGAACGCATTGAGCAATATAATACCGAAGTCAAAATTGTAAATACGGGTACCGTACTTCAAGTAGGCGATGGTATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTGGAATTTGAAGAGGGTACTATAGGCATTGCTTTGAACTTAGAATCCAAAAATGTTGGTGTTGTATTAATGggtgatggtttgatgatacaAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCCATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCTGCTCCCGGTATTATTTCGAGACGGTCCGTATATGAGCCTCTCCAAACAGGACTTATTGCTATTGATTCGATGATTCCCATAGGACGTGGCCAGCGCGAATTAATTATTGGAGACAGACAAACAGGTAAAACAGCAGTAGCCACAGATACTATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTGTTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACCTTACAAGAAAGAGGAGCAATGGAATACACTATTGTAGTAGCTGAAACAGCGGATTCTCCGGCTACATTACAATACCTCGCCCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTATCGTGAACGTCACACTTTAATCATTTATGATGATCCCTCTAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCGCCTGGTCGCGAAGCTTATCCAGGGgatgttttttatttgcattcgCGTCTTTTGGAAAGAGCCGCTAAATCAAGTTCTCAGTTAGGCGAAGGAAGTATGACTGCTTTACCAATAGTTGAAACCCAATCGGGAGATGTTTCCGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGTCAAATATTCTTATCCGCTGATCTATTCAATGCTGGAATCAGACCCGCTATTAATGTCGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAAGTAGCtggtaaattaaaattggaattaGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTactcaaaatcaattagcaAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCCCTTACCGTGGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTTGTGGAGTTACGTGCTTACTTAAATACGAATAAACCTCAATTCAAAGAAATCATATCTTCTACCAAGACATTCAATGGGGAAGCAGAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTCCAGGaacaagtagaaaaaaattga 1533 0.3783 MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAVGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLNTNKPQFKEIISSTKTFNGEAEALLKEAIQEQMELFLLQEQVEKN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1604 510 CDD ATP-synt_F1_alpha_C 376 501 IPR000793 GO:0015986
Ssu3g1604 510 TIGRFAM atpA: ATP synthase F1, alpha subunit 4 498 IPR005294 GO:0015986|GO:0045261|GO:0046933
Ssu3g1604 510 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Ssu3g1604 510 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 506 - -
Ssu3g1604 510 Gene3D - 95 372 IPR027417 -
Ssu3g1604 510 Pfam ATP synthase alpha/beta chain, C terminal domain 372 496 IPR000793 GO:0015986
Ssu3g1604 510 Hamap ATP synthase subunit alpha [atpA]. 2 502 IPR005294 GO:0015986|GO:0045261|GO:0046933
Ssu3g1604 510 ProSitePatterns ATP synthase alpha and beta subunits signature. 356 365 IPR020003 GO:0005524
Ssu3g1604 510 Gene3D - 373 501 IPR038376 -
Ssu3g1604 510 PIRSF F_ATPase_subunit_alpha 2 504 IPR005294 GO:0015986|GO:0045261|GO:0046933
Ssu3g1604 510 CDD F1_ATPase_alpha 95 368 IPR033732 GO:0032559
Ssu3g1604 510 Gene3D - 3 94 IPR023366 -
Ssu3g1604 510 PANTHER ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC 1 506 - -
Ssu3g1604 510 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Ssu3g1604 510 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 373 500 - -
Ssu3g1604 510 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Ssu3g1604 510 CDD ATP-synt_F1_alpha_N 28 94 - -
Ssu3g1604 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 371 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1604 Ssu-Chr3 44424360 44425892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1604 87 371 Primary Pumps ATPases(2) AT4G38510 30.132 3.31e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1604 K02111 - gmx:121173224 928.702