Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1600 ATGAGCCAGTGTGTTCCCAGCTGGGACGTCGACGACAACCCACCACCCCCAAGAGTCTCTCTTCGCTCCAACTCCAGTTCAACTGCCCCTGATGTCCCCATGTTAGACTACGAAGTTGCTGAACTTACATGGGAAAATGGACAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTAAAATCGCCCACAGCCGCCACCAATAAGTACACATGGGAGAAGCCTCGCGCCAGTGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCTTGCCCCACCGCGGAAAATCAACGTTAAATGGCGACGGCGTTTGCGGGAACTTCTTGGTGCCGTGGTTCGATCGCCACGGCAGCGCCGCCTCGGCGAACACGGTGACGATGGACGCATTGGTGCCCTGCTCGAACCGGAAGCAGAGCAAGCAGGGCATGGAGTCGGTCCCCGGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCTTGCTGCGGCAACCAGGGGGCCAAGGGGCACGAGATGAGTGGGAGGGATCAGAGTGTGAGTGGCAGTGCCACGTTTGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGGGAGTTGGGTGTGGGTTTCACTTCCACCTCCATCAACTCGCTCGAAAACACCAGCTCCGCTAAGCACTGCACCAAAACCACCACCGTAGACGACCACGATTCTGTTTCCCACAGTAAACCAATGCGGGAAGACGGGGATGacgagaagaaaaagagagcaAACGGAAAATCGTCGGTGTTCACTAAAAGGAGCAGAGCTGCTGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGCTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAAGTGCAGATGATGAACAGAATCAACATGTCATCGATGATGCTGCCACTGACCATGCAACAACAGCTTCAAATGTCAATGATGTCTCCAATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGATGGATATGAACTCCATAAACCGTGCTAACATCCCCGGCATCCCTCCGGTCCTCCACCCTTCTGCCTTCATGCCTATGGCGGCGTCATGGGATGCCGCTTCTGGCGGTGACCGGCTTCAAGGGACTCCGGCCACCGTGATGCCTGATCCTTTGTCCACATTTTTTGGATGCCAAGCTCAGCCCATGACCATGGATGCCTACAGTAGACTTGCTGCCATGTATCAGCAGCTGCACCAACCTCAACCTCCCGGTTCTGGATCCAAGAACTGA 1356 0.5361 MSQCVPSWDVDDNPPPPRVSLRSNSSSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKSPTAATNKYTWEKPRASGTLESIVNQATSLPHRGKSTLNGDGVCGNFLVPWFDRHGSAASANTVTMDALVPCSNRKQSKQGMESVPGTCMVGCSTRVGSCCGNQGAKGHEMSGRDQSVSGSATFGRDSKHVTLDTCDRELGVGFTSTSINSLENTSSAKHCTKTTTVDDHDSVSHSKPMREDGDDEKKKRANGKSSVFTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMDMNSINRANIPGIPPVLHPSAFMPMAASWDAASGGDRLQGTPATVMPDPLSTFFGCQAQPMTMDAYSRLAAMYQQLHQPQPPGSGSKN 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1600 451 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 451 IPR031066 -
Ssu3g1600 451 CDD bHLH_AtPIF_like 265 326 - -
Ssu3g1600 451 Coils Coil 271 291 - -
Ssu3g1600 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Ssu3g1600 451 MobiDBLite consensus disorder prediction 225 255 - -
Ssu3g1600 451 Gene3D - 261 326 IPR036638 GO:0046983
Ssu3g1600 451 MobiDBLite consensus disorder prediction 225 282 - -
Ssu3g1600 451 SMART finulus 271 320 IPR011598 GO:0046983
Ssu3g1600 451 MobiDBLite consensus disorder prediction 268 282 - -
Ssu3g1600 451 MobiDBLite consensus disorder prediction 1 32 - -
Ssu3g1600 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 327 IPR036638 GO:0046983
Ssu3g1600 451 Pfam Helix-loop-helix DNA-binding domain 270 315 IPR011598 GO:0046983
Ssu3g1600 451 PANTHER TRANSCRIPTION FACTOR UNE10 1 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1600 Ssu-Chr3 44211685 44217119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1600 1 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.835 6.57e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g1600 HLH 6.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1600 - - gmx:100798775 744.191