Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1594 ATGTTGGACTACGAATGGGTGAACCCATCAACGATAATACTCGCCGGAAATGGAGGCGCCACCGGCACAGAACCCGACCAAACCCACCGGCAAATCTTCGACCACAACTACACCATGCTACCTGATCCCATTTTACATGGTTCTACACCAACCACCACTGGTTTCTCTCATCACCACCACTTCAACCCACTGCAACCGCACCAGCACCACCCCTTCTTCGATCCACGCGCCTTCCCAGGCGCGTCCACCACTTCCTTTTCACCACCACCTTCGATGCTCTCACTTAACCCATTCCCCCCCGTCACTGCCTCTCACTGTGGGCTTGGGCCTGGTCCTGGGCTTGGGCTTCTGCTCATGCCCAAGTCCGAGGATGGCACTTTGCCCTTCAACTTCGGGAGTTCTGGTCCTGGGCTTGGGCTCAACCTCGGAGGCCGCACTTACTTCCCCTCTTGCAACGACGACACTGTCAGCCGACTCTACCGTTCAAGCAAGACGGTGGAGTCGGTTTCGACGGTGTCGTCGAATTTGCCGCGTTGTCAGGCGGAAGGATGCAATGCGGACCTTTCCGACGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAACGATTCTGCCAGCAGTGCAGCAGaTTCCATCTTCTTTCAGAATTTGACAATGGAAAACGGAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCAGCTCAAGAAATTCTCAAATCTCAGCCTTCTTTGGATAATGTTGCAAGGTCCTCGCCTGAATCTGGAGCGCAATCTTCGTCGTCGCTGCAGGTGGCAGCGTCACCCCCAGATTATTTCCAGCAAAGACCAAACCGAAATAGAGGCTCTTCGTCAACATCAGGGTCATTGTTTTTATCAAGTGGTTAG 954 0.5461 MLDYEWVNPSTIILAGNGGATGTEPDQTHRQIFDHNYTMLPDPILHGSTPTTTGFSHHHHFNPLQPHQHHPFFDPRAFPGASTTSFSPPPSMLSLNPFPPVTASHCGLGPGPGLGLLLMPKSEDGTLPFNFGSSGPGLGLNLGGRTYFPSCNDDTVSRLYRSSKTVESVSTVSSNLPRCQAEGCNADLSDAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPAQEILKSQPSLDNVARSSPESGAQSSSSLQVAASPPDYFQQRPNRNRGSSSTSGSLFLSSG 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1594 317 MobiDBLite consensus disorder prediction 246 317 - -
Ssu3g1594 317 Pfam SBP domain 179 252 IPR004333 GO:0003677
Ssu3g1594 317 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 137 300 IPR044817 GO:0003677
Ssu3g1594 317 SUPERFAMILY SBT domain 177 256 IPR036893 GO:0003677|GO:0005634
Ssu3g1594 317 MobiDBLite consensus disorder prediction 257 317 - -
Ssu3g1594 317 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Ssu3g1594 317 Gene3D - 174 240 IPR036893 GO:0003677|GO:0005634
Ssu3g1594 317 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 137 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1594 Ssu-Chr3 43510202 43512555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1594 1 226 SBP-box Gene Family AT1G02065 41.897 5.09e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu3g1594 SBP 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1594 - - var:108328505 409.453