Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1593 atggagtTCGGAGGGAACATGTTCTGCCTTGGCAACAGAGACCAAACTGGAAACACTAACGGTAACAGTTTCGCTTGGGATTCATGGGAAACAACCACAACCACTACTACTtctaatagtagtaataataataacaacaacaacaacagttcAAGGATGGTCAACGCTTTCAACATCGCCGGCGGCGGTGTGGCCGCCGCGAACCGTCACGAGGCGGCGGGGCTGGCCAACGCGCTCGTGTTCCAAAACGGTGGCGTTTTGCGTCACCGCCACCAGCAGCAGCATCCGTACGGTGGGAATGGGTCGCACGTGCACCCGGACCCGTACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAAGTGGAAGTGGAAGTGCTAGTGTAGCTGCTGCTACTTTTGATGGTGGATTGGTGTTGGGGGATAAGAGAGGGAAAGGGTATTCcggtggcggcggcggcggtgGTGGGGCGGTGAAGGCGGTGGGGTTCACGGCGGCGACGGTGCCTAGGTGTCAGGTGGAGGGGTGCCACGTGGCACTGCTGAACGCGAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCAAAAGTTGTGGTGCTAGGGATGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTAGCAGGTCACAacgagagaagaagaaagagctCCCATGATTCTGTTgcaaggaattcttcacaagGTTTTCCATACATGTCATCAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTCTCTCCTTCTGATCTCTCCACAAGATGCAGTGCTGCGTTGCGCGAGTTGATAGCGGAAAACCGGGCAGCCATAATGGCCAGGCAGTTTGTTTCAGATAGAGATTGGCATTTTAACCACCAAGCAGTGGAGGACTTCAAGGAGATTCAACCCGAGTCCAATTACTTCCCACAACAGATGTTTCCCCAGACACAGTGA 1056 0.4858 MEFGGNMFCLGNRDQTGNTNGNSFAWDSWETTTTTTTSNSSNNNNNNNNSSRMVNAFNIAGGGVAAANRHEAAGLANALVFQNGGVLRHRHQQQHPYGGNGSHVHPDPYLMCLKLGKRHYFEDASGSGSGSGSASVAAATFDGGLVLGDKRGKGYSGGGGGGGGAVKAVGFTAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGFPYMSSGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHFNHQAVEDFKEIQPESNYFPQQMFPQTQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1593 351 MobiDBLite consensus disorder prediction 243 264 - -
Ssu3g1593 351 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Ssu3g1593 351 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Ssu3g1593 351 Gene3D - 171 240 IPR036893 GO:0003677|GO:0005634
Ssu3g1593 351 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 21 342 - -
Ssu3g1593 351 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 342 IPR044817 GO:0003677
Ssu3g1593 351 Pfam SBP domain 179 252 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1593 Ssu-Chr3 43329611 43339808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1593 111 252 SBP-box Gene Family AT1G27370 51.408 6.14e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu3g1593 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1593 - - gmx:100806582 498.434