Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1592 ATGGCACGCGTTTCCCGGTCCTCCGCCCCGCGCCTCCTCTACGCCCTCTGCTCGTCCGCGTCGCGGTCGCCGGCGGCGTCCCTCCTGGGAGGAGCCTTCCAGCTCCGGCATCTCTCCAGCGGGAACGCGGCGGCGGCGGAGAAGGAGCCGTGGTGGAAGGAGTCGATGGAGCGGCTCCGCAACATCGGGATCTCGGCGCACATTGATTCCGGGAAGACGACACTGACGGAACGGATCCTGTACTACACAGGTCGGATCCACGAAATCCACGAGGTGAGGGGCAGGGACGGCGTCGGCGCCAAGATGGATTCCATGGACTTGGAGAGGGAGAAGGGAATCACCATTCAGTCTGCTGCCACATACTGCTCTTGGAAAGACTATAAGATTAACATTATTGACACGCCTGGTCATGTTGATTTTACCATTGAGGTAGAGCGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTTCTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAGAAGATACGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGGATGGGAGCAGATCCATGGAAAGTGTTAAATCAGgCTAGATCTAAGCTTCGGCATCATAGTGCTGGAATGCAAGTTCCAATAGGCTTGGAAGATGATTTTAAGGGACTTGTTGATCTTGTGCAGTTAAAGGCCTACTATTTTCATGGTTCAAATGGTGAAAAAGTTGTCACTGAAGAAGTGCCTGCAGATATGGAAGCCTTGGTGGCAGAAAAAAGACGTGAACTCATAGAAACTGTGTCAGAGGTTGATGATAAACTTGCTGAAGCTTTTCTTGGTGATGAGATCATATCAGCTGCTGATCTTGAGGAAGCAGTTCGTAGGGCTACCGTAGCACAGAAATTTATACCAGTATTCATGGGTAGTGctttcaaaaataagGGTGTACAGCCACTTCTGGATGgtgtaattagttatttgccATGTCCAATTGAAGTCAGTAATTATGCCCTTGACCAAACTAAGAATGAGGACAAGGTTGAGTTGCTTGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAGAATTTACGAGGGTGTGATTCGGAAGggtgattttattattaatgtaaacaCTGGCAAGAAGATCAAGGTTCCTCGCTTGGTGCGGATGCATTCTAATGAGATGGAGGACATTCAAGAGGCTCATGCTGGGCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGCTCAGTTAGATACACAATGACTTCTATGAATGTTCCAGAACCAGTGATGTCATTAGCTGTACATCCGGTCTCTAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAATCGCTTCCAAAAAGAGGATCCTACTTTTCGTGTTGGCTTGGACCCGGAGAGTGGGCAGACAATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTGGAACGCATTAGGAGAGAATATAAGGTTGATGCTTCAGTTGGAAAGCCCCGTGTTAACTTCAGAGAAACTGTTACTCAACGCGCTGATTTTGACTATTTGCATAAGAAGCAAACTGGAGGGCAAGGTCAATATGGACGGGTAATTGGGTATATTGAACCACTTCCTGCAGGGTCACCAACtaagtttgaatttgaaaacatGCTTGTTGGTCAAGCTATTCCATCAAATTTTATCCCTGCAATTGAGAAGGGTTTCAAAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCATTTAAGTTGGCTTCTATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGACCCGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAGAGAAAAGGTGTGATTGTCGGAAATGATCAGGAAGGAGATGATTCTGTCATCACTGCTCATgTCCCTCTTAACAATATGTTTGGGTACTCTACAGCTCTTCGCTCAATGACACAGGGCAAAGGTGAATTTACAATGGAATACAAGGAACATTCACCGGTTTCTCATGATGTACAGACACAATTGATAAACACGTACAAGGGCAACAAGGAAGCTGAATAA 2247 0.4504 MARVSRSSAPRLLYALCSSASRSPAASLLGGAFQLRHLSSGNAAAAEKEPWWKESMERLRNIGISAHIDSGKTTLTERILYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCSWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAGMQVPIGLEDDFKGLVDLVQLKAYYFHGSNGEKVVTEEVPADMEALVAEKRRELIETVSEVDDKLAEAFLGDEIISAADLEEAVRRATVAQKFIPVFMGSAFKNKGVQPLLDGVISYLPCPIEVSNYALDQTKNEDKVELLGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVRYTMTSMNVPEPVMSLAVHPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRADFDYLHKKQTGGQGQYGRVIGYIEPLPAGSPTKFEFENMLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKEAE 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1592 748 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 748 - -
Ssu3g1592 748 Gene3D - 533 738 IPR014721 -
Ssu3g1592 748 SUPERFAMILY EF-G C-terminal domain-like 450 527 IPR035647 -
Ssu3g1592 748 CDD mtEFG1_II_like 360 440 - -
Ssu3g1592 748 Pfam Elongation factor G C-terminus 651 736 IPR000640 -
Ssu3g1592 748 TIGRFAM EF-G: translation elongation factor G 55 742 IPR004540 GO:0003746|GO:0005525|GO:0006414
Ssu3g1592 748 Pfam Elongation Factor G, domain III 452 526 IPR041095 -
Ssu3g1592 748 SUPERFAMILY EF-G C-terminal domain-like 650 742 IPR035647 -
Ssu3g1592 748 Gene3D - 51 336 IPR027417 -
Ssu3g1592 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 331 IPR027417 -
Ssu3g1592 748 Gene3D Elongation Factor G (Translational Gtpase), domain 3 459 532 - -
Ssu3g1592 748 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 748 IPR045044 -
Ssu3g1592 748 CDD EFG_III 453 528 IPR009022 -
Ssu3g1592 748 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 57 334 IPR000795 GO:0003924|GO:0005525
Ssu3g1592 748 Pfam Elongation factor G, domain IV 527 647 IPR005517 GO:0005525
Ssu3g1592 748 Gene3D - 654 724 - -
Ssu3g1592 748 Pfam Elongation factor Tu domain 2 373 439 IPR004161 GO:0005525
Ssu3g1592 748 Pfam Elongation factor Tu GTP binding domain 58 331 IPR000795 GO:0003924|GO:0005525
Ssu3g1592 748 CDD mtEFG1_C 653 730 IPR035649 -
Ssu3g1592 748 SUPERFAMILY Translation proteins 298 450 IPR009000 -
Ssu3g1592 748 PRINTS GTP-binding elongation factor signature 182 191 IPR000795 GO:0003924|GO:0005525
Ssu3g1592 748 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Ssu3g1592 748 PRINTS GTP-binding elongation factor signature 61 74 IPR000795 GO:0003924|GO:0005525
Ssu3g1592 748 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Ssu3g1592 748 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
Ssu3g1592 748 SMART EFG_IV_2 528 648 IPR005517 GO:0005525
Ssu3g1592 748 TIGRFAM small_GTP: small GTP-binding protein domain 59 227 IPR005225 GO:0005525
Ssu3g1592 748 CDD EF-G 61 333 - -
Ssu3g1592 748 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
Ssu3g1592 748 SUPERFAMILY Ribosomal protein S5 domain 2-like 527 649 IPR020568 -
Ssu3g1592 748 CDD EFG_mtEFG1_IV 531 646 IPR005517 GO:0005525
Ssu3g1592 748 Hamap Elongation factor G [fusA]. 55 741 IPR004540 GO:0003746|GO:0005525|GO:0006414
Ssu3g1592 748 SMART EFG_C_a 650 737 IPR000640 -
Ssu3g1592 748 Gene3D Translation factors 341 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1592 Ssu-Chr3 43138126 43169609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1592 375 535 Eukaryotic Initiation Factors Gene Family AT3G22980 25.281 3.06e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1592 K02355 - gmx:100783315 1418.68