Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1586 ATGAATCTGAGCTACGAACAGAGGCTTCAGGTTGTTGCCAAAATCATACTCGACGACGATGCACGCGCCGGTGACGCGCCGCCGTGTCAGGAAGAGCTTGGACTCAGGGCTACCCTCAAGCCGCACCAGGTGGAAGGGGTTTCGTGGCTCATACGGAGGTACAAACTCGGCGTCAACGTCGTCCTCGtGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTACCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGCGCAATCTACGCATGAAAATACATGAACATGTAACAGGGCAGTCATCAACACTGAATGTCTTGTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCATTGATGGATCAGGATTTTCTTTCTCAAATACCATGGCAATATGCAATCATTGATGAAGCTCAGAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTGAAAGATCGCTATATAATGCCAAGACGGTTGTTGATGACTGGCACGCCTATTCAAAACAACCTTTCTGAACTATGGGCGTTGATGTATTTTTGCGTGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGACATCAGTGATCTTTCATCAGTTCATGATGCTCCAAAGGTAAAGGAGAGACTTAAAATTCTGAGAAGTGTATTGGGAGCCTTTATACTTCGACGTACCAAGTCAAAGCTTATTGAGTGTGGAAATTTACTGCTGCCACCTCTCACTGAGATAACTGTGTTAGTACCCCTTGTCATCCTGCAGAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCATAAGCTACTTGCACTGTCTTCTGGAACTTCAAATCATCAGTCACTACAGAATATTGTGTTACAGCTAAGAAAAGCATGTAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACATCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCGTATGAGCGTCTTGATGGATCAATTAGGGCTGAAGAGCGCTTCGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTAATACGGGCCTGAACTCTGAAGCTGACCAAAATGGAGCATTTGTTTTTATGATCTCAACAAGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGTATAAACCTTGTTACAGAGCGGACAGTTGAGGAAGTAATTATGCGGAGGGCAGAGAGAAAATTGCTGCTGAGCATCAATGTTACAGGTGATAACATTCTCAAAGATGACAATAAAGAACCATCTGAAGTTGGAACTGGTGATTTGAAATCCATCATATTTGGCTTACATATGTTTGATCCCACTGAGATCAATGATGAAAATCATAGGGATATGAACATACCAGAAATTAGTGCTATGGCTGACAGGGTGCTTGCTATGCGTGATAAACAAATACTTGATAAGGATGAAAGGAAATTTGAGGTCAATCCaagaaacattttaaaaggGGATGATGTTAAGGAAGGAAGTTCTGCTTCTCTCTCTTGTGATCTTGGTCTTGATGAGGCTTCATATATTTCCTGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTTGTGACTCAATCATGGACTTGAGGAGCGGAAGAAACTTAGATGAGGAAAAGAGTCTAAAACTTGAGTCTGCAAGGAAGAAGGCAGAGGAAAAGAAGCTATCTAGGTGGGAAGCTCTTGGATATCAATCATTGAATGTAAACGACGCTATCAGCCCAACAGACAATGACATCACATCAGCTACTGGGTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCATCTGAACCTGCTATAATTTTCAGGTATTCTTTTTATTAG 2118 0.4117 MNLSYEQRLQVVAKIILDDDARAGDAPPCQEELGLRATLKPHQVEGVSWLIRRYKLGVNVVLVVICPLSVTDGWVSEIVKFTPKLEVFKYVGDKEYRRNLRMKIHEHVTGQSSTLNVLLPFDVLLTSYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCVPSVFGTLDQFLSTFKDISDLSSVHDAPKVKERLKILRSVLGAFILRRTKSKLIECGNLLLPPLTEITVLVPLVILQKKVYMSILRKELHKLLALSSGTSNHQSLQNIVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANTGLNSEADQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTVEEVIMRRAERKLLLSINVTGDNILKDDNKEPSEVGTGDLKSIIFGLHMFDPTEINDENHRDMNIPEISAMADRVLAMRDKQILDKDERKFEVNPRNILKGDDVKEGSSASLSCDLGLDEASYISWVKKFEEVSKSSCDSIMDLRSGRNLDEEKSLKLESARKKAEEKKLSRWEALGYQSLNVNDAISPTDNDITSATGSVHFVYGDCTAPSNVCSSEPAIIFRYSFY 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1586 705 Pfam Helicase conserved C-terminal domain 338 462 IPR001650 -
Ssu3g1586 705 Gene3D - 61 254 IPR038718 -
Ssu3g1586 705 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 3 700 - -
Ssu3g1586 705 Gene3D - 256 569 IPR027417 -
Ssu3g1586 705 SMART ultradead3 35 207 IPR014001 -
Ssu3g1586 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 513 IPR001650 -
Ssu3g1586 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 502 IPR027417 -
Ssu3g1586 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 199 IPR014001 -
Ssu3g1586 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 244 IPR027417 -
Ssu3g1586 705 SMART helicmild6 367 462 IPR001650 -
Ssu3g1586 705 PANTHER HELICASE CHR10-RELATED 3 700 - -
Ssu3g1586 705 CDD SF2_C_SNF 330 473 - -
Ssu3g1586 705 Pfam SNF2-related domain 62 317 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1586 Ssu-Chr3 42871522 42890831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1586 336 489 RAD5 or RAD16-like Gene Family AT5G22750 35.065 3.15e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu3g1586 SNF2_N 3.2e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1586 K20092 - gmx:100797182 1240.33