Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1582 ATGGGGAGTATGGGTGACTCAGACAGAAAACGACGTCACTTTAGCTCCTTGTCCCCTACACCTGCAGCTGCTACTGCCAAGAAGCTACCCTTTTTGCCCGTTTCTGAAGACAAGAAGCTTGATATTGTTGTACTTCAgtatcaaaatcaaaaacttaCACAAAAATTAGAAACTCAGAAGTTAGAGTATACAGCTCTTGAGAATAGGTTTTCACAACTGAAGGAAAGGCAAAAGTCATATGATTCTACTTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTGGAGTTGTGTTCTGAATGTACGAGAGAGTCAAGCAGCAAATCAAATTCTAGATTTGCATCAATCATGGAAGTTTTGTGTAGGCAGAAATTGTCCTCTGATATTGAGGTGAAAGTTAAAACATTGAGATTGGAATTCAGTGAACTTCATTTAAAGCACAAGTCTTTGGCAAGTGAGTTCCAAATTCAGAGAGATCTTGATGCCAAAAATAAAGCTGACCTTGAAAGATTAAAAGGGGAACTGGCAAGCACTGTTGCAGAGCTAGAAGAAAGCAATCACAAACTTGCTACTCTTAAGGCAGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCAGTCCTAAATGTTGGAAGTACGCACATTCCTAGTGATAAGATCAGAGACAAGCAAAAGGATTTGCAAGATATGGAATTTACTTTGAAGGAGCTATTGGACCAAGGTTCAACTCGATTAGTGGAACTGAAAAGTCTTCACGaggaaagaataagaatatTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCTTTCCAATTGGTTAGTGATCAGATAGAAAAATCGAAATCAGAAGTTCTGGAATATCAGGCCCAATATGAGAAACTACAGGTTGAGAAGGATAATCTTGCTTGGAGGGAGAGGGAGTGgtacattaaaaatgatttagcAGATATTTTTCAAAGATCTGGGGCAGTTTTAGATTTTAGAGTGGCTGATATACGCTCTGAGATACAGAAGaagatagaggaaagaaatgtGATTGAAAATAAGCTGAAAGAGGAAGCAAGAGAACCAGGAAGGAAACAAATTATTGCTGAATTTAAATCTCTGGTTTCTTCATTTCCTGAGGAAATGGGGTCTATGCAAAGCCaactaagaaaatataaagaatcAGCTTCGGATATCCATTCTCTGCGTGCAGATGTGCAGTCTGTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGTGTTTTCTGTTAGGTCTGCTGGTCAATTTTCTGAGATAAAGAGGCTGCTtggtatgGTTCAAGATTTGAGAGATAATGAGCAGGACGTGAAGTTGATATTGGAAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTAATGGATGCACGGGAAGCAGAATACAGGGCATGGGCACGTGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAACTTCGAGTTAAGATGGCAAATGAAGCAGAAGCCAGATCTCAACAAAAGCTGGCTGCTGCTGAAGCTGAGATAGTGGACATGAGACAGAAATTAGAAGATTCTAAAAGGCAAATGCGTGATCTGTCTGATGTCTTGAAATctaagaacaaacaaaatgagaaCTACTTATCTGAAATAGAGAGTATTGGACAAGCATACGACGACATGCAAACTCAAAACCAACATCTTTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTAAGGGCGAGACAGAAGCAGGATTCTTTGCTCATGGAGAAGCGGGTAATTGAACAAGAGATCCAGCAAGCAAACACATCCCTGAATTTATATGATGTGAAAGCGGCAAGAATTGAAGACCAGTTGAAGTTTTGTTCCGATCAGCTTCAAAGACTTGCAGAGGATAAGCTTCAAAGTTCTGTCACTTTGGAAAATACACAAAGAAGGCTGTCTGATATTAGGAGACAATCTCAACAGGTTAGGGATACGGTGGTGGAAATGCAATCTAAAATTGGTAGTAATCGAGTGACACGTATGGAGTTACAAGTAGAGCTTGAGAAAGAAAGGTTTGCCAAGAAAAGAGTAGAGGAGGATCTGGAGGTTGCTAGGAGAAAGTTTTCCCGCCTTAAAGAACAGAATGAGGGCTCTTCAGTAACTGAAAAGCTTCAACAGGAACTTGAAGAGTACAGGGAAATTATTAAGTGCAGTATCTGCCAAGACAGGGCAAAAGagGTGGTAATTACAAAATGCTACCACTTGTTCTGCTATTCGTGTATCCAGAAAGTTGCTGGGAGTAGGCATCGCAAGTGTCCACGGTGTGCTACAAGCTTTGGGGCTAATGATGTTAAGTCTGTTTATTTGTAA 2415 0.3843 MGSMGDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYTALENRFSQLKERQKSYDSTLAVVKKSWEQLVNDLELCSECTRESSSKSNSRFASIMEVLCRQKLSSDIEVKVKTLRLEFSELHLKHKSLASEFQIQRDLDAKNKADLERLKGELASTVAELEESNHKLATLKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMEFTLKELLDQGSTRLVELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQLVSDQIEKSKSEVLEYQAQYEKLQVEKDNLAWREREWYIKNDLADIFQRSGAVLDFRVADIRSEIQKKIEERNVIENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADVQSVSSILDRKVKECDVFSVRSAGQFSEIKRLLGMVQDLRDNEQDVKLILEMFRRESIDSRDVMDAREAEYRAWARVQSLKSSLDEHNLELRVKMANEAEARSQQKLAAAEAEIVDMRQKLEDSKRQMRDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQEIQQANTSLNLYDVKAARIEDQLKFCSDQLQRLAEDKLQSSVTLENTQRRLSDIRRQSQQVRDTVVEMQSKIGSNRVTRMELQVELEKERFAKKRVEEDLEVARRKFSRLKEQNEGSSVTEKLQQELEEYREIIKCSICQDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPRCATSFGANDVKSVYL 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1582 804 Coils Coil 632 652 - -
Ssu3g1582 804 Coils Coil 342 369 - -
Ssu3g1582 804 Coils Coil 695 729 - -
Ssu3g1582 804 SMART ring_2 752 790 IPR001841 -
Ssu3g1582 804 Coils Coil 222 242 - -
Ssu3g1582 804 Coils Coil 290 317 - -
Ssu3g1582 804 MobiDBLite consensus disorder prediction 1 15 - -
Ssu3g1582 804 CDD RING-HC_BRE1_like 750 791 - -
Ssu3g1582 804 SUPERFAMILY RING/U-box 744 802 - -
Ssu3g1582 804 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 123 804 - -
Ssu3g1582 804 Coils Coil 506 561 - -
Ssu3g1582 804 Coils Coil 660 680 - -
Ssu3g1582 804 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 120 - -
Ssu3g1582 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 804 IPR013083 -
Ssu3g1582 804 ProSitePatterns Zinc finger RING-type signature. 767 776 IPR017907 -
Ssu3g1582 804 Pfam Zinc finger, C3HC4 type (RING finger) 751 792 - -
Ssu3g1582 804 PANTHER RING FINGER PROTEIN-RELATED 123 804 IPR013956 GO:0004842|GO:0010390
Ssu3g1582 804 ProSiteProfiles Zinc finger RING-type profile. 752 790 IPR001841 -
Ssu3g1582 804 Coils Coil 168 205 - -
Ssu3g1582 804 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g1582 804 PANTHER RING FINGER PROTEIN-RELATED 1 120 IPR013956 GO:0004842|GO:0010390
Ssu3g1582 804 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1582 Ssu-Chr3 42752382 42787452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1582 752 803 C3H Transcription Factor Family AT2G42030 37.736 4.61e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1582 K10696 - gmx:100790744 1209.13