Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1580 ATGTGTCCTTCACTCATTCTCTGTGCCTCTCTAAATCAAGCCCCACCCACCCCTCTCCACCTTGGGAAACAAATCAACATGGAAAGTGATGCTGGGGAAAACTTGTTTGGCACATTTTCCTCCTCCACCACATCCGTCACCATCTCCACCACTACCGCCacctcctcatcatcatcatcacctaCATCTTCTACCTCAAGCTCAAACTCATGCACCAAGCAGGACTACCAAACAAGTCCTCCGGATGATTCAACAGCAGCTCAAAATCAAAACCCCCCAAATAGCAAGGAATgcaaaaaaagacaaagaaatgaCAATGAGAACAAACACCCCAGTTATAGAGGGGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATCCGTGAGCCAAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACTGCAGAAATGGCAGCCAGAGCACATGATGTGGCAGCTTTAGCCATCAAGGGTCATTTAGCTTTCCTCAATTTCCCCAATTTGGCTCAATATCTTCCAAGGCCCATCAGTACATCACCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACTTTCTTTGATGATGCAAATTATTGTCAATCTGAAGCTGAACAAAACCAAGCAGAACATGCTTCTTCATCTTTAACTCTATGCATGGACAATACTGAAGCACGGCAAGTTCAAGCAGAACAAGCTTCATCTTCAACTCTATCCATGGACACTACTCAAGAGTCTTCATGTTCTCCCTCTACTGCAGATGATGACACACTGTTTGACCTACCAGATCTTTTTCCTGATGGAAACAGTGGACTTTTCTCCTATTCTTCTTGGCATTTGTGTGCAGTTGATAGTGGATTCCGGCTTGAAGAGCAATTTTTGTGGGAGAATTACTAG 909 0.429 MCPSLILCASLNQAPPTPLHLGKQINMESDAGENLFGTFSSSTTSVTISTTTATSSSSSSPTSSTSSSNSCTKQDYQTSPPDDSTAAQNQNPPNSKECKKRQRNDNENKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHLAFLNFPNLAQYLPRPISTSPKDIQAAAAKAATTFFDDANYCQSEAEQNQAEHASSSLTLCMDNTEARQVQAEQASSSTLSMDTTQESSCSPSTADDDTLFDLPDLFPDGNSGLFSYSSWHLCAVDSGFRLEEQFLWENY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1580 302 Pfam AP2 domain 111 162 IPR001471 GO:0003700|GO:0006355
Ssu3g1580 302 Gene3D AP2/ERF domain 112 170 IPR036955 GO:0003700|GO:0006355
Ssu3g1580 302 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Ssu3g1580 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 230 302 - -
Ssu3g1580 302 MobiDBLite consensus disorder prediction 51 114 - -
Ssu3g1580 302 PANTHER ETHYLENE RESPONSE FACTOR 230 302 - -
Ssu3g1580 302 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 228 - -
Ssu3g1580 302 PANTHER ETHYLENE RESPONSE FACTOR 29 228 - -
Ssu3g1580 302 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Ssu3g1580 302 CDD AP2 111 171 IPR001471 GO:0003700|GO:0006355
Ssu3g1580 302 MobiDBLite consensus disorder prediction 233 257 - -
Ssu3g1580 302 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Ssu3g1580 302 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Ssu3g1580 302 MobiDBLite consensus disorder prediction 96 114 - -
Ssu3g1580 302 MobiDBLite consensus disorder prediction 51 95 - -
Ssu3g1580 302 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1580 Ssu-Chr3 42711263 42712171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1580 100 298 AP2-EREBP Transcription Factor Family AT2G44940 53.846 2.80e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu3g1580 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1580 - - pvu:PHAVU_008G141000g 418.313