Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1558 ATGACTTCAAAACTTAACCGTGGAAATGGCTCCTATGGTGATGGTGCATCAAAGCCAATCCACTTTTTCAGGATCATGCTACCTGACAACCTTCAGCAAGGAAAGCTAAGGCTTCCAGGAAAGTTTGTGAACAAATATGGAAAACAGTTATCCAACACAATGTTTCTTAAGCTTCCAAACGGTGCAGAATGGAAAGTAAATTTGAAGAAACGTGGTGGTGGTGTTTGGTTTCAAGAAGGTTGGAAAGAGTTTGTAGAGTATCACTCTCTAGCCCATGGGCACCTATTGTTTTTCAGATTCGATGGAACATCCTGTTTTCATGTATTCATCTGTGATATGAGTACCATGGAAATAGACTACCCTGTCATCAAAGCAAATCATAAAAGGGCCAGAATTAATAGGGAAGAAATTCAACCACGCAAGACACTGAAAACAAATGGAAATAAGAAAAGGAGTAATTCCAATTTGCAGGACACTGCCTTTCATCAAAATGTCAGAGACCACAAAGGCAAGATTCTAGATTcgtaa 528 0.3902 MTSKLNRGNGSYGDGASKPIHFFRIMLPDNLQQGKLRLPGKFVNKYGKQLSNTMFLKLPNGAEWKVNLKKRGGGVWFQEGWKEFVEYHSLAHGHLLFFRFDGTSCFHVFICDMSTMEIDYPVIKANHKRARINREEIQPRKTLKTNGNKKRSNSNLQDTAFHQNVRDHKGKILDS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1558 175 MobiDBLite consensus disorder prediction 137 161 - -
Ssu3g1558 175 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 3 125 - -
Ssu3g1558 175 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Ssu3g1558 175 Gene3D - 15 115 IPR015300 -
Ssu3g1558 175 CDD B3_DNA 21 112 IPR003340 GO:0003677
Ssu3g1558 175 Pfam B3 DNA binding domain 25 112 IPR003340 GO:0003677
Ssu3g1558 175 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Ssu3g1558 175 PANTHER B3 DOMAIN-CONTAINING 3 125 - -
Ssu3g1558 175 SMART B3_2 22 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1558 Ssu-Chr3 42001785 42002651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1558 22 138 B3 DNA Binding Superfamily AT1G49475 36.752 2.21e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g1558 B3 5.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1558 - - gmx:100793986 267.7