Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1556 atgagaaatttgAAGTCTCTAATGATCCTTGTGTTGAGGAACAATAATATTTCTGACACAATTCCAACCTATCTTGGggagtttcaaaatttaacCCAGCTgGATTTAAGCTTCAACAACCTAATTGGACAGATTCCAAACTCacttttcaatttgaattcACTTTCTTATTTGTTTCTTGGTAATAACAAGCTAAACGGTACAATTCCACCAAAAAAAAGTGCCTCTTTGCTCAACATAGACTTATCATATAACAACTTAAGAGGGAGCCTCCCTTCTTGGGTCACTGAACAAAATTTACAACtCAATTTAGTTGGCAACAACTTCCAAGCAGAGAATACAGAGAGCAGTGGCATGCCTTCAGGATTAAGCTGCCTTCAGCGTAACTTTCCTTGCAATCGTGGCACTGGAATCTATTACAACTTTTTGATCAATTGTGGTGGTCCTCAGATTACATCTTCCAATGGAATTGTCTATGAAAGTGATAACGAAGCACTTGGTCCAGCTACATATTTCGTGACAGACACACAGAGGTGGGCGGTTAGTAATGTGGGGTACTTTAGTGGAAGCAGCAACTTTAGTGAATATATAAGTTCTGTGCCAAATCAATTCACTGGTACTACAGATTCCAACATGTTCCAAACAGCGCGGCTGTCTGCTTCATCATTGAGATATTATGGCTTGGGACTGGAAAATGGTAACTACAGTGTGAGGCTCCAGTTTGCTGAAAGCAAAATTCTGGATTCTGCCTCATGGAAAAGCCTTGGGAGGCGAGTCTTTGATGTTTACATTCAGAGGAATCTTGTTTTAAAGGATTTTGATATACAAAGGGAAGCTGGCCAGGTGTCTTTCAAAGCTGTTTCAAAGGACTTTAGAGCTCAAGTATTGGAAAACTACCTTGAGATCCACTTTTTTTGGGCTGGAAAAGGGACTTGTTGTATACCTGATCAATATACTTATGGACCCTTAATTTCAGCCATCAGTGCAACCCCAGATTTCATTCCCTCTGTTAGTAACAAGCCTCCTACcagtaaaaagaaaaggactGGTCTGAAAGTGGGAGTAGCTCTTGGCATTGGAGTTTTAAGCATTGTTTCTATTTCTGTGCTTTATTGCCTTATTCAAAGAAGACGACATCATGTTGATGAAAGTGAAGAGCTCTTAGGTATAGAAGCTAGACCATACACTTTCAGTTACTCTGAGTTAAAGAATGCCATAAATGACTTTGATTCTGCCAATAAGCTTGGAGAAGGTGGATTTGGCCCTGTTTATAAgGGGACACTTAATGATGGAAGAGTGGTTGCTGTTAAGCAACTATCTACACGATCTCGTCAAGGAAACTCAGAGTTCATAACTGAGATTGCTATTATTTCGGCAGTGCAACATCGTAACCTCATTAAGTTACATGGATGCTGCATTGAGAGGGATGAACGGCTTCTTGTGTATGAGTATTTAGAAAATGGGAGTCTTAATCAACTACTATTTGGAAAAGTAAGTTCAATCCTCAATTGGCCAATGCGATTTGGTATCTGCAGGGGCATTGCACGAGGCCTAGCTTATCTCCACGAAGAATCACAGCTACGTATAATTCACCGTGACGTAAAGGCTAGTAATATTCTGCTTGACCATCAATTTGTCCCTAAAATATCGGATTTTGGTTTGGCTAAGCTATTTGATCAGGAAAAAACCCACTTAAGTACTAATCTTGCTGGGACAATGGGATATTTGGCACCGGAATATGCTTGGTGTGGGCACCTCACAGAGAAAGCAGATGTATTTTCCTTTGGTATTGTAGCTCTAGAGATTGTTAGTGGAAGGTCGAATTCGGATCCTAATTCCATCTTGGACAATGAAGGAAAAAAGACTTTTCTTCTAGAATGGGCTTGGAACGTCTACATGAACAACAATGAAATTGAATTGGTGGATTCTAGACTGCAAGAGTTTGATGAGACAGAAGTGAAACGTGTCATTGGCATTTCTCTATTGTGCACACAAGCCTCGCCTTCCATGCGGCCATCCATGTCCCGCATAGTGGCAATGCTTTCCGGTGATGTTGAAGTGACCAGTGTAACATCAATGCCTGAGTACTTGGCTTATATAAACTTTGATGATGTAACTGACTTCACGAATACAACAAATGGAGTTGACGTGAGTCATCACACATCATCAAACACCAGAATTAGGAGTGGTGTCAACTAA 2199 0.3943 MRNLKSLMILVLRNNNISDTIPTYLGEFQNLTQLDLSFNNLIGQIPNSLFNLNSLSYLFLGNNKLNGTIPPKKSASLLNIDLSYNNLRGSLPSWVTEQNLQLNLVGNNFQAENTESSGMPSGLSCLQRNFPCNRGTGIYYNFLINCGGPQITSSNGIVYESDNEALGPATYFVTDTQRWAVSNVGYFSGSSNFSEYISSVPNQFTGTTDSNMFQTARLSASSLRYYGLGLENGNYSVRLQFAESKILDSASWKSLGRRVFDVYIQRNLVLKDFDIQREAGQVSFKAVSKDFRAQVLENYLEIHFFWAGKGTCCIPDQYTYGPLISAISATPDFIPSVSNKPPTSKKKRTGLKVGVALGIGVLSIVSISVLYCLIQRRRHHVDESEELLGIEARPYTFSYSELKNAINDFDSANKLGEGGFGPVYKGTLNDGRVVAVKQLSTRSRQGNSEFITEIAIISAVQHRNLIKLHGCCIERDERLLVYEYLENGSLNQLLFGKVSSILNWPMRFGICRGIARGLAYLHEESQLRIIHRDVKASNILLDHQFVPKISDFGLAKLFDQEKTHLSTNLAGTMGYLAPEYAWCGHLTEKADVFSFGIVALEIVSGRSNSDPNSILDNEGKKTFLLEWAWNVYMNNNEIELVDSRLQEFDETEVKRVIGISLLCTQASPSMRPSMSRIVAMLSGDVEVTSVTSMPEYLAYINFDDVTDFTNTTNGVDVSHHTSSNTRIRSGVN 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1556 732 Gene3D Transferase(Phosphotransferase) domain 1 485 693 - -
Ssu3g1556 732 Pfam Malectin domain 142 327 IPR021720 -
Ssu3g1556 732 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Ssu3g1556 732 Gene3D - 142 331 - -
Ssu3g1556 732 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 724 - -
Ssu3g1556 732 Gene3D Phosphorylase Kinase; domain 1 371 484 - -
Ssu3g1556 732 ProSiteProfiles Protein kinase domain profile. 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1556 732 SUPERFAMILY L domain-like 4 111 - -
Ssu3g1556 732 Pfam Leucine rich repeat 6 65 IPR001611 GO:0005515
Ssu3g1556 732 MobiDBLite consensus disorder prediction 713 732 - -
Ssu3g1556 732 Gene3D Ribonuclease Inhibitor 1 141 IPR032675 -
Ssu3g1556 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Ssu3g1556 732 ProSiteProfiles Leucine-rich repeat profile. 30 52 IPR001611 GO:0005515
Ssu3g1556 732 CDD STKc_IRAK 415 681 - -
Ssu3g1556 732 SMART serkin_6 409 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1556 732 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 724 - -
Ssu3g1556 732 Pfam Protein tyrosine and serine/threonine kinase 412 681 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1556 Ssu-Chr3 41826346 41842322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1556 1 706 Receptor kinase-like Gene Family AT1G56120 61.331 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1556 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1556 - - qsu:111995102 992.26